References

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The list of references below is not exhaustive. If your paper is missing, you are cordially invited to send it to us at info@highspeedscanning.com.

Books:

"High-Speed Atomic Force Microscopy in Biology", Toshio Ando, Springer-Verlag GmbH, Germany, (2022),
Hardcover ISBN: 78-3-662-64783-7 , eBook ISBN: 978-3-662-64785-1, DOI: 10.1007/978-3-662-64785-1, 319 pages.
"Myosins, A Superfamily of Molecular Motors ", Lynne M. Coluccio, Springer Nature, Switzerland (2020).
N. Kodera, T. Ando
Chapter 7 (pp.127-152) " High-Speed Atomic Force Microscopy to Study Myosin Motility " DOI: 10.1007/978-3-030-38062-5_7
"Molecular Motors, Methods and Protocols", Christophe Lavelle, Springer Nature, Switzerland (2018).
N. Kodera, T. Ando
Chapter 5 (pp.103-122) "Direct Imaging of Walking Myosin V by High-Speed Atomic Force Microscopy" DOI: 10.1007/978-1-4939-8556-2_6
"Nanoscale Imaging, Methods and Protocols", Yuri L. Lyubchenko, Springer Nature, Switzerland (2018).
T. Watanabe-Nakayama, K. Ono
Chapter 14 (pp.201-212) "High-Speed Atomic Force Microscopy of Individual Amyloidogenic Protein Assemblies " DOI: 10.1007/978-1-4939-8591-3_12
"Nanoscale Imaging, Methods and Protocols", Yuri L. Lyubchenko, Springer Nature, Switzerland (2018).
T. Uchihashi, H. Watanabe, N. Kodera
Chapter 14 (pp.159-179) “Optimum substrates for imaging biological molecules with high-speed atomic force microscopy” DOI: 10.1007/978-1-4939-8591-3_10
"Noncontact Atomic Force Microscopy", S. Morita et al., Springer International Publishing, Switzerland (2016).
T. Uchihashi, N. Kodera, T. Ando
Chapter 22 (pp.481-527) "High-speed Atomic Force Microscopy" DOI 10.1007/978-3-319-15588-3_22
"Atomic Force Microscopy in Nanobiology", Kunio Takeyasu, Pan Stanford Publishing, Singapore (2014).
T. Uchihahsi, N. Kodera, T. Ando
Chapter 8 (pp.143-176) "Development of High-speed AFM and Its Biological Applications"
"Nanoscale Liquid Interfaces: Wetting, Patterning, and Force Microscopy at the Molecular Scale", Thierry Ondarçuhu & Jean-Pierre Aimé, Pan Stanford Publishing (2013).
T. Ando, T. Uchihashi
Chapter (pp.713-742) "Nanovisualization of proteins in action using high-speed AFM"
"Single-molecule Studies of Proteins" (Biophysics for the Life Sciences, Vol 2), Andres Oberhauser, Springer (2013).
T. Uchihashi, N. Kodera, T. Ando
Chapter 5 (pp.119-147) "Nanovisualization of proteins in action using high-speed AFM"
"Experimental Tools for the Intrinsically Disordered Protein Analysis" (Springer series Methods in Molecular Biology, Vol. 897, part 1), Vladimir N.
Uversky & A. Keith Dunker, Springer (2012).
T. Ando, N. Kodera
Chapter 4 (pp.57-69) "Visualization of mobility of atomic force microscopy"
DOI: 10.1007/978-1-4614-3704-8_4
"Control Technologies for Emerging Micro and Nanoscale Systems" (Lecture Notes in Control and Information Sciences, Vol.413), Eleftheriou, Evangelos; Moheimani, S.O. Reza, Springer, ISBN 978-3-642-22172-9 (2011).
T. Ando
Chapter "Techniques for developing high-speed AFM"
P.I. Chang and S.B. Andersson
Chapter "Non-raster scanning in atomic force microscopy for high-speed imaging of biopolymers"
"Atomic force microscopy in liquid", Arturo M. Baró & Donald Refenberger, Wiley-VCH Verlag GmbH (2011/12/15) ISBN-10: 3527327584, ISBN-12: 978-3527327584.
T. Ando, T. Uchihashi, N. Kodera, M. Shibata, D. Yamamoto, H.Yamashita
Chapter 7 (pp.189-210), "High-speed AFM for observing dynamic processes in liquid"
"Life at the Nanoscale - Atomic force microscopy of live cells", Yves Dufrêne, Pan Stanford Publishing Pte. Ltd. (2011). Print ISBN: 9789814267960 e-Book ISBN 9789814267977
T.Uchihashi, T. Ando
Chapter 8, "High-speed atomic force microscopy for dynamic biological imaging"
"Atomic force microscopy in biomedical research: Methods and Protocols" (Methods in Molcular Biology (Clifton, N.J.)(2011) Vol. 736, Part 3, 285- 300), Pier C. Braga & Davide Ricci, Humana Press (2009.4.30): DOI: 10.1007/978-1-61779-105-5_18), ISBN-10: 1617791040, ISBN-13: 978-1617791048.
T. Uchihashi, T. Ando
Chapter 18, "High-speed Atomic Force Microscopy and Biomolecular Processes"
"Handbook of Single-Molecule Biophysics", Peter Hinterdorfer & Antoine van Oijen (Eds.), Springer-Verlarg (2009): ISBN-978-0-387-76496-2.
T. Ando, T. Uchihasi
Chapter 17 (pp.487-523), "High-speed atomic force microscopy"
"Single Molecule Dynamics in Life Science", T. Yanagida & Yoshiharu Ishii (Eds.) Wiley-VCH (2008): ISBN-10: 3-527-31288-9, ISBN-13: 978-3-527-31288-7.
T. Ando, T. Uchihashi, N. Kodera, D. Yamamoto, M. Taniguchi, A. Miyagi, H. Yamashita
Chapter 12 (pp.277-296), "High-speed atomic force microscopy for nano-visualization of biomolecular processes"
"High speed and Highly Accurate Tip-Scanning Atomic Force Microscope", Dong-Yeon Lee, VDM Verlag Dr. Müller (2008): ISBN-10: 3639002709, ISBN-13: 978-3639002706, 136 pages.
"Roadmap of Scanning Probe Microscopy", Seizo Morita (Ed.), Springer-Verlag (2006): ISBN-10: 3540343148, ISBN-13: 9783540343141.
T. Ando
Chapter 14 (pp.109-116), "High-speed SPM"

Papers 2025:

Amyot R., Miyashita O., Wu X., Takeda K., Kodera N., Konno H., Tama F., Flechsig H.; “Flexible Fitting to Infer Atomistic-Precision Models of Large-Amplitude Conformational Dynamics in Biomolecules from High-Speed Atomic Force Microscopy Imaging” ACS Nano 2025 19(38):34065-34079. DOI: 10.1021/acsnano.5c10073
Ashoka A., Clancy A., Panjwani N., Cronin A., Picco L., Aw E., Popiel N., Eaton A., Parton T., Shutt R., Feldmann S., Carey R., Macdonald T., Liu C., Severijnen M., Kleuskens S., Muscarella L., Fischer F., Barbosa de Aguiar H., Friend R., Behrends J., Christianen P., Howard C., Pandya R.; “Magnetically and optically active edges in phosphorene nanoribbons” Nature 639, 348-353 (2025) DOI: 10.1038/s41586-024-08563-x
Asmari N., Cencen V., Kangül M., Andany S., Tekin C., Bastings M., Karimi A., Fantner G.; “Compensating nonlinearities in high-speed atomic force microscopy using data-driven feedforward controller design”; Journal of Micro and Bio Robotics Volume 21, 15 (2025) DOI: 10.1007/s12213-025-00194-3
Baumann K., Bertosin E., Barth A., Dekker C., Lim R.; “Elucidating the nanoscopic organization and
dynamics of the nuclear pore complex”; Nucleus ISSN: 1949-1034 1949-1042 (2025) DOI: 10.1080/19491034.2025.2510106
Biyani M., Isogai Y., Sharma K., Maeda S., Akashi H., Sugai Y., Nakano M., Kodera N., Biyani M., Nakajima M.; “High-speed atomic force microscopy and 3D modeling reveal the structural dynamics of ADAR1 complexes”; Nature Communications 16 4757 (2025) DOI: 10.1038/s41467-025-59987-6
Caroprese V., Tekin C., Cencen V., Mosayebi M., Asmari N., Liverpool T., Woolfson D., Fantner G., Bastings M.; “Interface flexibility controls the nucleation and growth of supramolecular networks”; Nature Chemistry 17, p.325–333 (2025) DOI: 10.5281/zenodo.11545939
Dabrowa T., Badura D., Pruchnik B., Kopczynski W., Rangelow I., Kijak E., Gotszalk T.; “Wear Measurements in Cylindrical Telescopic Crowns Using an Active Piezoresistive Cantilever with an Integrated Gold Microsphere Probe” Materials 18(19) DOI: 10.3390/ma18194624
Ewijk C., Jain G., Knelissen Y., Matiya S., Van Der Wel P., Roos W.; “Direct Observation of Secondary Nucleation in Huntingtin Amyloid Formation by High-Speed Atomic Force MicroscopyClic”; Journal of the American Chemical Society 147 25 (2025) DOI: 10.1021/jacs.5c05571
Ganser C., Nishiguchi S., Chan F., Uchihashi T.; “A look beyond topography: Transient phenomena of Escherichia coli cell division captured with high-speed in-line force mapping” Sci Adv 11(5) 2025 DOI: 10.1126/sciadv.ads3010
Goodchild J., Curtis B., Pan Y., Jiang Y., Jiao F., Gladfelter A., Scheuring S.; “Septin higher-order structure on yeast membranes in vitro”; Nature Communications 16, 5055 (2025) DOI: 10.1038/s41467-025-60344-w
Gu C., Takada S., Brandani G., Terakawa T.; “Molecular dynamics simulations of human cohesin subunits identify DNA binding sites and their potential roles in DNA loop extrusion” PLoS comput Biol 21(4):e1012493 DOI: 10.1371/journal.pcbi.1012493
Hernandez C., Thoms M., Berninghausen O., Becker T., Beckmann R.; “Mechanistic insights into Bcs1-mediated mitochondrial membrane translocation of the folded Rieske protein” EMBO J. 44(13):3720-3741. DOI: 10.1038/s44318-025-00459-4
Honrath S., Heussi M., Beckert L., Scherer D., Lim R., Burger M., Leroux J.-C.; “Closing the gap: Nonviral TFAMoplex transfection boosted by bZIP domains compared to AAV-mediated transduction” Mol Ther Nucleic Acids 36 (2) DOI: 10.1016/j.omtn.2025.102526
Hoque A., Yao C.-W.; “Nanoscale Characterization of Nanomaterial-Based Systems: Mechanisms, Experimental Methods, and Challenges in Probing Corrosion, Mechanical, and Tribological Properties” Nanomaterials 15 (23) DOI: 10.3390/nano15231824
Hou K., Ge P., Sawaya M., Lutter L., Dolinsky J., Yang Y., Jiang Y., Boyer D., Cheng X., Pi J., Zhang J., Lu J., Abskharon R., Yang S., Yu Z., Feigon J., Eisenberg D.; “How short peptides disassemble tau fibrils in Alzheimer’s disease” Nature 644(8078):1020-1027 DOI: 10.1038/s41586-025-09244-z
Ikeda T., Nojima T., Yamamoto S., Yamada R., Niwa T., Konno H., Taguchi H.; “Seesaw protein: Design of a protein that adopts interconvertible alternative functional conformations and its dynamics” Proc Natl Acad Sci U S A 122 (7) DOI: 10.1073/pnas.2412117122
Imai S., Nagamori K., Onishi U., Lyu X., Fujitsuka I., Ueda M., Yamano T., Hanayama R.; “Induction of antigen-specific regulatory T cells by engineered extracellular vesicles” Drug Deliv 32(1) DOI: 10.1080/10717544.2025.2586305
Ishikawa F., Takahashi K., Takaya A., Tanabe G., Homma M., Uchihashi T.; “Dynamic Oligomerization Processes of Bacillus subtilis ClpP Protease Induced by ADEP1 Studied with High-Speed Atomic Force Microscopy”; American Chemical Society (2025) DOI: 10.1021/acsomega.4c11303
Jiang Y., Wang Z., Scheuring S.; “A structural biology compatible file format for atomic force microscopy”; Nature Communications 16 1671 (2025) DOI: 10.1038/s41467-025-56760-7
Joo S., Eom S., Choi Y., Jeong U., Cho Y., Yu W., Park K., Hong S.; “Atomic Force Microscopy for Cross‐Disciplinary Materials Research” Small Methods 9(11) DOI: 10.1002/smtd.202500514
Kadava T., Strasser J., Marefat M., Yin V., Preiner J., Trouw L., Heck A.;“ Structural Insights Into Complement Inhibition: Visualizing Distinct Binding Modes of C4b-Binding Protein Complexes With C4b and SAP” Mol Cell Proteomics 24 (9) DOI: 10.1016/j.mcpro.2025.101046
Kanaoka Y., Mori T., Nagaike W., Itaya S., Nonaka Y., Kohga H., Haruyama T., Sugano Y., Miyazaki R., Ichikawa M., Uchihashi T., Tsukazaki T.; “AFM observation of protein translocation mediated by one unit of SecYEG-SecA complex”; Nature 16 225 (2025) DOI: 10.1038/s41467-024-54875-x
Kanaoka Y., Suzuki N., Nonaka Y., Yamashita S., Miyashita O., Ito A., Ogasawara S., Tama F., Murata T., Uchihashi T.; “Visualizing the Functional Dynamics of P-Glycoprotein and Its Modulation by Elacridar via High-Speed Atomic Force Microscopy” IJMS volume 27 Issue 1 DOI: 10.3390/ijms27010356
Kimura S., Adachi K., Ishii Y., Komiyama T., Saito T., Nakayama N., Yokoya M., Takaya H., Yagai S., Kawai S., Uchihashi T., Yamanaka M.; “Molecular-level insights into the supramolecular gelation mechanism of urea derivative”; Nature Communications 16 3758 (2025) DOI: 10.1038/s41467-025-59032-6
Kodan A., Amyot R., Umeda K., Ogasawara F., Kimura Y., Kodera N., Ueda K.; “Direct Visualization of ATP-Binding Cassette Protein A1 Mediated Nascent High-Density Lipoprotein Biogenesis by High-Speed Atomic Force Microscopy”; Nano Lett. 5c03116 (2025) DOI: 10.1021/acs.nanolett.5c03116
Kozai T., Fernadez-Martinez J., Kapinos L., Gallardo P., Van Eeuwen T., Saladin M., Eliasian R., Mazur A., Zhang W., Tempkin J., Panatala R., Delgado-Izquierdo M., Escribano-Marin R., Feng Q., Lin C., Sali A., Chait B, Raveh B., Veenhoff L., Rout M., Lim R.; “Karyopherins remodel the dynamic organization of the nuclear pore complex transport barrier”; Nature Cell Biology 27, 2089-2101 (2025) DOI: 10.1038/s41556-025-01812-9
Kuga T., Sunagawa N., Kobayashi K., Yamada H., Imai T., Uchihashi T., Igarashi K.; “Enzyme-Directed Assembly of Antiparallel Cellulose II Nanocrystals: Unraveling the Mechanism Beyond Spontaneous Crystallization”; ACS Publication (2025) DOI: 10.1021/jacsau.5c00993.
Lafargue E., Duneau J.-P., Buzhinsky N., Ornelas P., Ortega A., Ravishankar V., Sturgis J., Casuso I., Bergdoll L.; “Membrane lipid composition modulates the organization of VDAC1, a mitochondrial gatekeeper”; Communications Biology 8 936 (2025) DOI: 10.1038/s42003-025-08311-5
Lansky S., Wang Z., Clarke O., Chipot C., Scheuring S.; “Structural dynamics and permeability of the TRPV3 pentamer”; Nature Communications 16, 4520 (2025) DOI: 10.5281/zenodo.15213718
Li L., Miyagi A., Scheuring S.; “A high signal-to-noise ratio and high-frequency seesaw cantilever for high-speed atomic force microscopy” Nature communications 16 10307 (2025) DOI: 10.1038/s41467-025-65240-x
Maciag-Dorszynka M., Morcinek-orlowska J., Baranska S.; “Concise Overview of Methodologies Employed in the Study of Bacterial DNA Replication” Int J Mol Sci 26(2) DOI: 10.3390/ijms26020446
Mahmood I., Kubo S., Noguchi H., Okazaki K.; “Membrane Constriction by Dynamin through GTP-Driven Conformational Changes from Coarse-Grained Molecular Dynamics Simulations” J Phys Chem Lett. 16 (48) DOI: 10.1021/acs.jpclett.5c02867
Matias Z., Lopes C., Santos N., Carvalho F.; “Nanotechnology meets medicine: applications of atomic force microscopy in disease” Biophys Rev. 17(2):359-384. DOI: 10.1007/s12551-025-01306-w
Matsui H., Ganser C., Tamaki K., Liu Q., Chang F, Uchihashi T., Verma P., Sagara Y., Yagai S., Umakoshi T.; “Tip-scan high-speed atomic force microscopy in organic solvent: A versatile tool for visualizing dynamic behaviors of soft-materials” ChemRxiv v1 (2025) DOI: 10.26434/chemrxiv-2025-z5rnr
Matsushima K., Sumikama T., Suzuki T., Ito M., Nagasawa Y., Sumino A., Flechsig H., Ogoshi T., Umeda K., Kodera N., Murakoshi H., Shibata M.; “Structural dynamics of mixed-subunit CaMKIIα/β heterododecamers filmed by high-speed AFM”; Nature communications 16, 10603 (2025) DOI: 10.1038/s41467-025-66527-9
McArthur S., Umeda K., Kodera N.; “Nano-Scale Video Imaging of Motility Machinery by High-Speed Atomic Force Microscopy” Biomolecules (2025) DOI: 10.3390/biom15020257
Muramatsu D., Watanabe-Nakayama T., Tsuji M., Umeda K., Hikishima S., Nakano H., Sakashita Y., Ikeda T., Konno H., Kodera N., Ando T., Noguchi-Shinohara M., Ono K.; “ALZ-801 prevents amyloid β-protein assembly and reduces cytotoxicity: A preclinical experimental study”; FASEB J. 39 3 e70382 (2025) DOI: 10.1096/fj.202402622R
Myhre M., Kumar Das M., Williams E., David W., Kerwin S.; “From Triads to Tools: A Comprehensive Review of the Expanding Roles of G-Triplex Structures” Molecules 30(21):4303. DOI: 10.3390/molecules30214303
Nakano M., Miyamoto S., Ohnishi C., Nogami C., Hirose N., Fujita-Fujiharu Y., Muramoto Y., Noda T.;” Influenza A virus circumvents the innate immune response through the sequestration of double-stranded RNA” J Virol 99 (10) DOI: 10.1128/jvi.00737-25
Naska S., Merino A., Espadas J., Singh J., Roux A., Colom A., Low H.;” Mechanism for Vipp1 spiral formation, ring biogenesis, and membrane repair”; nature structural & molecular Biology 32 p.571-584 (2025) DOI: 10.1038/s41594-024-01401-8
Natividade R., Danzer B., Somoza V., Koehler M; “Atomic force microscopy at the forefront: unveiling foodborne viruses with biophysical tools”; npj Viruses 3 25 (2025) DOI: 10.1038/s44298-025-00107-y
Neval Y., Tanino H., Sakuraba S., Amyot R., Flechsig H., Matsumoto A., Kono H., Puppulin L., Shibata M., Aoyama H., Inoue T., Matsumoto K., Sakai K.; “Ligand Binding to the Membrane-Distal Domain of the Met Receptor Induces Dimerization at the Membrane-Proximal Domain” ACS Publication 19(48):40746-40758 (2025) DOI: 10.1021/acsnano.4c17358
Nguyen P., Abe H., Ono S., Kodera N.; “Actin monomers influence the interaction between Xenopus cyclase-associated protein 1 and actin filaments” BioRxiv 15:2025.08.14.670363 DOI: 10.1101/2025.08.14.670363
Nishide G., Ishibashi T., Lim K., Qiu Y., Hazawa M., Matsushima A., Wong R.; “Zooming into Gene Activation: Estrogen Receptor α Dimerization and DNA Binding Visualized by High-Speed Atomic Force Microscopy” ACS Nano 19(16):15395-15410 2025 DOI: 10.1021/acsnano.4c14943
Nishide G., Lim K., Kobayashi A., Qiu Y., Hazawa M., Ando T., Okada Y., Wong R.; “Spatiotemporal dynamics of protamine–DNA condensation revealed by high-speed atomic force microscopy”; Nucleic Acids Research 53 6 (2025) DOI: 10.1093/nar/gkaf152
Nishide G., Wong R.;” Unraveling dynamics of nuclear pore and chromatin via HS-AFM”; PMID: 40388005 Nation Library of Medicine (2025) DOI: 10.1007/s12565-025-00849-y
Nishizawa Y., Inui T., Uchihashi T., Suzuki D.; “Determination of the inhomogeneous deswelling of thermoresponsive poly(N-isopropyl methacrylamide) microgels by combining dynamic light scattering, high-speed atomic force microscopy, and electrophoresis”; Polymer Journal 57 p.419-426 (2025) DOI: 10.1038/s41428-024-00988-5
Nodera Y., Watanabe Y., Ishii Y., Watanabe G., Ganser Ch., Uchihashi T., Sugiyasu K.; “The Role of Hydrogen Bonding in the Formation and Dynamics of Two Distinct Types of Cyclic Supramolecular Polymers”; Angewandte Chemie International Edition e202512811 (2025) DOI: 10.1002/ange.202512811
Nomura K., Tsuji A., Yamashita H., Abe M., Fujikawa K., Mori S., Osawa T., Toyonaga H., Osugi, Yasuhara K., Morigaki K., Nishiyama K-I., Shimamoto K.; “Membrane tubulation induced by a bacterial glycolipid”; Scientific Reports 15 9699 (2025) DOI: 10.1038/s41598-025-93563-8
Nunez E., Saha P., Ibarluzea M., Muguruza-Montero A., Alicante S., Ramis R., Leonardo A., Bergara A., Villarroel A., Rico F.; “Multivalent Interactions between Chaperone and Ribosome-Nascent Chain Complex Revealed by High-Speed AFM and MD Simulations” ACS nano 19 (50) DOI: 10.1021/acsnano.5c13500
Ono K., Shinohara M., Nakayama T.; “Nano‐space Video‐imaging reveals Action of ADUCANUMAB to Amyloid β aggregates: The Comparison with the Action of LECANEMAB” PMCID: PMC12725824 DOI: 10.1002/alz70861_108042
Pan Y., Zhan J., Wang Z., Jiang Y., Xia D., Scheuring S.; “Single-Molecule Structures and Kinetics of the AAA-ATPase Bcs1 Translocating Folded ISP” J Mol Biol. 437 (24) DOI: 10.1016/j.jmb.2025.169531
Plaza-G A I., Rodriguez M., Buchanan S., Miguez-Amil S., Lemishko K., Moreno-Herrero F., Fernandez-leiro R., Cielsielski G., Ibarra B.; “Autoregulation of the real-time kinetics of the human mitochondrial replicative helicase”, Nat commun 16(1):5460. DOI: 10.1038/s41467-025-60289-0
Pothineni B., Barner J., Grundmeier G., Contreras D., Castro M., Keller A.; “Rapid assembly of highly ordered DNA origami lattices at mica surfaces” Discov Nano 20(1):77.20 (1) DOI: 10.1186/s11671-025-04254-2
Ravishankar V., Araujo L., Lafargue E., Byrne D., Buzhinsky N., Wolfe M., Bautista N., Beyene B., Larimi M., Duneau J.-P., Sturgis J., Rajendran M., Bezrukov S., Casuso I., Rostovtseva T., Bergdoll L.; “A Membrane-Disruptive Action of VBIT-4 Challenges Its Role as a Widely Used VDAC Oligomerization Inhibitor” BioRxiv 3:2025.06.30.661942 DOI: 10.1101/2025.06.30.661942
Robinson M., Payton O., Picco L., Beazely M., Miles M., Leonenko Z.; “Contact mode high-speed AFM of phase separated lipid bilayers to study Amyloid-β interactions”; (2025) DOI:10.1101/2025.01.14.633021
Sahoo B., Nakayama T., Sulladze S., Anantharamaiah G., Reif B., Ramamoorthy A.; “Bifunctional nanodisc platforms for studies on self-assembly and amyloid fibrillation” Chem commun (camb) 61 (66) DOI: 10.1039/d5cc00972c
Schaubeder J., Ganser C., Palasingh C., Eibinger M., Nypelö T., Uchihashi T., Spirk S.; “Single-Molecule Imaging of Wood Xylans on Surfaces and Their Interaction with GH11 Xylanase” Biomacromolecules 26(3):1639-1646 2025 DOI: 10.1021/acs.biomac.4c01446
Sandira M., Lim K., Yoshida T., Sajidah E., Narimatsu S., Imakawa R., Yoshimura K., Nishide G., Qiu Y., Taoka A., Hazawa M., Ando T., Hanayama R., Wong R.; “Nanoscopic Profiling of Small Extracellular Vesicles via High-Speed Atomic Force Microscopy (HS-AFM) Videography” Journal of Extracellular Vesicles (2025) DOI: 10.1002/jev2.70050
Seferovic H., Sticht P., Hain L., Zhu R., Diethör S., Wechselberger C., Weber F., Bernhard D., Plochberger B., Oh Y., Riggers J., Hinterdorfer P.; “Nanomechanical binding mechanism of ligands drives agonistic activity”; Nature Communications 16 6674 (2025) DOI: 10.1038/s41467-025-61929-1
Shigetoh K., Hirata Y., Muramoto N., Ishida N.;” Destruction of virus particles via mechanical and chemical virucidal activity of nanocolumnar copper thin films” Mater Today Bio 32:101803 DOI: 10.1016/j.mtbio.2025.101803
Shin E., Jiang Y., Thienpont B., Sturgis J., Scheuring S.; “High‐Speed Atomic Force Microscopy Reveals the Dynamic Interplay of Membrane Proteins is Lipid‐Modulated” Small Sci 5(9):2500258. DOI: 10.1002/smsc.202500258. eCollection DOI: 10.1002/smsc.202500258
Sikander U., Hazzard M., Hamerton I., Wisnom M.; “Improving Adhesion of UHMWPE with Epoxy Matrix by Reactive Ion Etching of UHMWPE Using Ar–O2 Plasma and the Effects of Plasma on Adhesion at the Micro- and Macroscale” ACS Appl Mater Interfaces 17(42) DOI: 10.1021/acsami.5c10473
Strasser J., Frischauf N., Schustereder L., Karner A., Bosgra S., Labrijn A., Beurskens F., Preiner J.; “A kinetic model of antigen-dependent IgG oligomerization and complement binding”; Small Science (2025) DOI: 10.1002/smsc.202500149
Sun L., Hu J., Ayhan Y., Chen C.; “Deciphering Desorption Pathways and Mechanisms of Peptide Supramolecular Structures Thermodynamically and Kinetically by High-Speed AFM” ACS Cent Sci 11(5) DOI: 10.1021/acscentsci.5c00215
Takeda H., Shinoda S., Goto C., Tsutsumi A., Sakaue H., Zhang C., Hirashima T., Konishi Y., Ono H., Yamamori Y., Tomii K., Shiino H., Tamura Y., Zuttion S., Senger B., Friant S., Becker H., Araiso Y., Kobayashi N., Kodera N., Kikkawa M., Endo T.; “Oligomer-based functions of mitochondrial porin”; Nature Communications 16 6854 (2025) DOI: 10.6084/m9.figshare.28665635.
Takei T., Sasazawa Y., Noshiro D., Kitagawa M., Kataura T., Hirawake-Mogi H., Kawauchi E., Nakano Y., Tashiro E., Saitoh T., Nishiyama S., Ogawa S., Kakuta S., Kazuno S., Miura Y., Taniguchi D., Korolchuk V., Noda N., saiki S., Imoto M., Hattori N.; “Ubiquilin-2 liquid droplets catalyze α-synuclein fibril formation” EMBO J 44(22) DOI: 10.1038/s44318-025-00591-1
Takekawa N., Yamaguchi A., Nishiuchi K., Uehori M., Kinoshita M., Minamino T., Imada K.; “Sodium-Dependent Conformational Change in Flagellar Stator Protein MotS from Bacillus subtilis” Biomolecules 15(2) DOI: 10.3390/biom15020302
Tamaki K., Hanayama H., Datta S., Kawano M., Ganser C., Yagai S.; “Light-intensity-dependent out-of-equilibrium processes toward dimensionally distinct nanopolymorphs”, Chem November 17 (2025) DOI: 10.1016/j.chempr.2025.102818
Tanaka H., Dias J., Jay B., Kita S., Sasaki M., Takeda H., Kishimoto N., Sasaki S., Misumi S., Mizokami M., Neuveut C., Sumikama T., Shibata M., Maenaka K., Machida S.; “Structural basis of the hepatitis B virus X protein in complex with DDB1” Proc Natl Acad Sci U S A 122(24):e2421325122122 (24) DOI: 10.1073/pnas.2421325122
Thompson G., Hoyle A., Lewis P., Prada-Sanchez E., Swift J., Heesom K., Lowe M., Stephens D., Stevenson N.; “Multiple golgins are required to support extracellular matrix secretion, modification, and assembly” J Cell Biol 224(10) DOI: 10.1083/jcb.202411167
Trang N., Yamada R., Umeda K., Yawata S., Sasaki R., Uchihashi T., Ikliptikawati D., Kodera N., Ando T., Hazawa M., Konno H.; “Lipid-binding ability of Prx2 regulates the structural and functional properties of exosomes from SW480 cells”; Biochemical and biophysical Research communication, volume 790 (2025) DOI: 10.1016/j.bbrc.2025.152878
Tsukamoto Y., Kawamura A., Yurtsever A., Suzuki H., Rojas-Chaverra N., Ino D., Ichikawa T., Wei W., Chih-cheng Voon D., Matsumoto A., Matsumoto K., Takahashi H., Kodera N., Fukuma T., Ogawa Y., Nishiyama M., Sakai K: “Condensation-dependent interactome of a chromatin remodeler underlies tumor suppressor activities” Nature communications 16, 9599 (2025) DOI: 10.1038/s41467-025-64655-w
Utsumi M., Yanaka S., Burton-Smith R., Song C., Ganser C., Yamazaki C., Kasahara H., Shimazu T., Uchihashi T., Murata K., Kato K.;” Microgravity-Assisted Exploration of the Conformational Space of Amyloid β Affected by Tottori-Type Familial Mutation D7N” ACS Chem Neurosci 16(14) DOI: 10.1021/acschemneuro.5c00217
Uyeda T., Yamazaki Y., Kijma S., Noguchi T., Ngo K.; “Multiple Mechanisms to Regulate Actin Functions: “Fundamental” Versus Lineage-Specific Mechanisms and Hierarchical Relationships” Biomolecules 15(2) DOI: 10.3390/biom15020279
Vuillemot R., Pellequer J.-L., Grudinin S.; “Deciphering conformational dynamics in AFM data using fast nonlinear NMA and FFT-based search with AFMFit” Communications Biology 8, 1381 (2025) DOI: 10.1038/s42003-025-08365-5
Wang T., Yong Ng C., Jue Ng B., Toh W., Hui J.; “Multi-omics analysis of small extracellular vesicles in osteoarthritis: bridging the gap between molecular insights and clinical applications” Burns Trauma 13:tkaf023 DOI: 10.1093/burnst/tkaf023
Yamaguchi T., Okatsu K., Kubota M., Mitsumori A., Yamagata A., Fukata Y., Fukata M., Shibata M., Fukai S.;” Structural insights into heterohexameric assembly of epilepsy-related ligand–receptor complex LGI1–ADAM22” eLife 2;14 DOI: 10.7554/eLife.105918
Yamanaka K., Nishizawa Y., Iwase K., Kawane D., Atarashi H., Uchihashi T., Suzuki D.; “Cross-Linker Hydrophobicity Determines Microgel Nanostructures”; ACS publication (2025) Vol 17/Issue 52 DOI: 10.1021/acsami.5c21164
Yazdani S., Biria D., Pazuki G.; “Challenges and opportunities in the application of carbon nanotubes as membrane channels to improve mass transfer to cells” RSC Adv 15(30) DOI: 10.1039/d5ra02939b
Zhang C., Xie M., Wang L., Fan C., Chao J.; “Linked data storage using DNA origami nanostructures” Nature communications 16, 11422 (2025) DOI: 10.1038/s41467-025-66274-x
Zhang J., Bhatt A., Maksaev G., Luo Y., Yuan P.; “Lipid-mediated gating of a miniature mechanosensitive MscS channel from Trypanosoma cruzi” Nature communications 16 7339 (2025) DOI: 10.1038/s41467-025-62757-z
Zhang X., Lim K., Qiu Y., Hazawa M., Wong R.;” Strategies for the Viral Exploitation of Nuclear Pore Transport Pathways” Viruses 17 151. (2) DOI: 10.3390/v17020151

Papers 2024:

Akter L., Flechsig H., Marchesi A., Franz C.;” Observing Dynamic Conformational Changes within the Coiled-Coil Domain of Different Laminin Isoforms Using High-Speed Atomic Force Microscopy”; Sci. 2024 4 1951 (2024) DOI: 10.3390/ijms25041951
Ando T., Fukuda S., Ngo K., Flechsig H.; “High-Speed Atomic Force Microscopy for Filming Protein Molecules in Dynamic Action” Annu Rev Biophys 53(1):19-39 DOI: 10.1146/annurev-biophys-030722-113353
Arvelo D., Sacristan C., Chacon E., Tarazona P., Garcia R.; “Interfacial water on collagen nanoribbons by 3D AFM” J. Chem. Phys 160 164714 (2024) DOI: 10.1063/5.0205611
Barreo D., Wijeratne S., Zhao X., Cunningham G., Yan R., Nelson C., Arimura Y., Funabiki H., Asbury C., Yu Z., Subramanian R., Biggins S.; “Architecture of native kinetochores revealed by structural studies utilizing a thermophilic yeast”; Current biology 34 17 (2024) DOI: 10.1016/j.cub.2024.07.036
Bharambe N., Li Z., Seiferth D., Balakrishna A., Biggin P., Basak S.; “Cryo-EM structures of prokaryotic ligand-gated ion channel GLIC provide insights into gating in a lipid environment” Nature communications 15(1):2967 DOI: 10.1038/s41467-024-47370-w
Campos C., Whitley K., Radler P., Loose M., Holden S., Saric A; “Self-organization of mortal filaments and its role in bacterial division ring formation”; Nature physics 20 p.1670-1678 (2024) DOI: 10.5522/04/24754527
Carlero D., Fukuda S., Bocanegra R., Ando T., Martin-Benito J., Ibarra B.; “Conformational Dynamics of Influenza A Virus Ribonucleoprotein Complexes during RNA Synthesis”; ACS Nano 18 30 (2024) DOI: 10.1021/acsnano.4c01362Cencen V., Ghadiani B., Andany S., Kangül M., Tekin C., Penedo M., Bastings M., Fantner G.; “High-Speed Atomic Force Microscopy Imaging of DNA Three-Point-Star Motif Self Assembly Using Photothermal Off-Resonance Tapping”; Journal of Visualized Experiments 205 e66470 (2024) DOI: 10.3791/66470
Davidson I., Barth R., Horn S., Janissen R., Nagasaka K., Wutz G., Stocsits R., Dekker C., Bauer B., Peters J.-M.; “Cohesin supercoils DNA during loop extrusion”; bioRxiv (2024) DOI: 10.1101/2024.03.22.586228
Ewijk C., Maity S., Roos W.; “Visualizing Molecular Dynamics by High-Speed Atomic Force Microscopy” Methods Mol Biol 2694:355-372 DOI: 10.1007/978-1-0716-3377-9_17
Ewijk C., Xu F., Maity S., Sheng J., Stuart M., Feringa B., Roos W.; “Light-Triggered Disassembly of Molecular Motor-based Supramolecular Polymers Revealed by High-Speed AFM” Angew chem Int Ed Engl 63(14):e202319387 DOI: 10.1002/anie.202319387
Fillaux S., Sun Z., Lyubchenko Y. ; “Nanoscale Structure, Interactions, and Dynamics of Centromere Nucleosomes” Biomacromolecules 25(8):4715-4727 DOI: 10.1021/acs.biomac.3c01440
Frischauf N., Strasser J., Borg E., Labrijn A., Beurskens F., Preiner J.; “Complement activation by IgG subclasses is governed by their ability to oligomerize upon antigen binding”; PNAS 121 44 e2406192121 (2024) DOI:10.1073/pnas.2406192121
Fujita J., Hibino K., Kagoshima G., Kamimura N., Kato Y., Uehara R., Namba K., Uchihashi T., Matsumura H.; “Structural basis for the interaction between the bacterial cell division proteins FtsZ and ZapA”; bioRxiv 2024.07.18.604045 (2024) DOI: 10.1101/2024.07.18.604045
Garcia-Sacristan C., Gisbert V., Klein K., Šarić A., Garcia R., “In Operando Imaging Electrostatic-Driven Disassembly and Reassembly of Collagen Nanostructures”; ACS Nano 18 28 (2024) p.18485-18492 DOI: 10.1021/acsnano.4c03839
Heath G., Micklethwaite E., Storer T.; “NanoLocz: Image Analysis Platform for AFM, High-Speed AFM, and Localization AFM” Small Methods 8(10):e2301766. DOI: 10.1002/smtd.202301766
Hoang-Phou S., Pal S., Slepenkin A., Abisoye-Ogunniyun A., Zhang Y., Gilmore S., Shelby M., Bourguet F., Mohagheghi M., Noy A., Rasley A., de la Maza L., Coleman M.; “Evaluation in mice of cell-free produced CT584 as a Chlamydia vaccine antigen”; bioRxiv 2024.06.04.597210 (2024) DOI: 10.1101/2024.06.04.597210
Hoang-Phou S., Pal S., Slepenkin A., Abisoye-Ogunniyun A., Zhang Y., Gilmore S., Shelby M., Bourguet F., Mohagheghi M., Noy A., Rasley A., de la Maza L., Coleman M.; “CT584 Is Not a Protective Vaccine Antigen against Respiratory Chlamydial Challenge in Mice”; Vaccines 12 1134 (2024) DOI: 10.3390/vaccines12101134
Homma H., Ngo K., Yoshioka Y., Tanaka H., Inotsume M., Fujita K., Ando T., Okazawa H.; “PQBP3/NOL7 is an intrinsically disordered protein”; Biochemical and Biophysical Research Communications 736 (2024) DOI: 10.1016/j.bbrc.2024.150453
Jekhmane S., Derks M., Maity S., Slingerland C., Tehrani K., Medeiros-Silva J., Charitou V., Ammerlaan D., Fetz C., Consoli N., Cochrane R., Matheson E., Weijde M., Elenbaas B., Lavore F., Cox R., Lorent J., Baldus M., Künzler M., Lelli M., Cochrane S., Martin N., Roos W., Breukink E., Weingarth M.; “Host defence peptide plectasin targets bacterial cell wall precursor lipid II by a calcium-sensitive supramolecular mechanism” Nature Microbiology 9(7):1778-1791 DOI: 10.1038/s41564-024-01696-9
Jiang Y., Miyagi A., Wang X., Qiu B., Boudker O., Scheuring S.; “HS-AFM single-molecule structural biology uncovers basis of transporter wanderlust kinetics”; Nature Structural & Molecular Biology 31 (2024) p.1286-1295 DOI: 10.1038/s41594-024-01260-3
Ju H., Skibbe H., Fukui M., Yoshimura S., Naoki H.; “Machine learning-guided reconstruction of cytoskeleton network from live-cell AFM images” iScience 27(10):110907 DOI: 10.1016/j.isci.2024.110907
Kinoshita M., Minamino T., Uchihashi T., Namba K. ; “FliH and FliI help FlhA bring strict order to flagellar protein export in Salmonella” Communication Biology 7(1):366 DOI: 10.1038/s42003-024-06081-0
Koseki Y., Yamaguchi Y., Aoyama M., Tada M., Senoo A., Ishii-Watabe A., Uchihashi T., Uchiyama S., Kato K., Yanaka S., Caaveiro J.; “Key role of Pro230 in the hinge region on the IgG architecture and Function”; bioRxiv 2024.05.10.593077 (2024) DOI: 10.1101/2024.05.10.593077
Krutzke K., Seifert J., Gawaz M., Rheinlaender J., Schäffer T.; “Volume Regulation and Nonosmotic Volume of Individual Human Platelets Quantified by High-Speed Scanning Ion Conductance Microscopy”; Thromb Haemost. (2024) DOI: 10.1055/a-2378-9088
Lafargue E., Duneau J.-P., Buzhinsky N., Ornelas P., Ortega A., Ravishankar V., Sturgis J., Casuso I., Bergdoll L.; “Lipid composition of the membrane governs the oligomeric organization of VDAC1”; bioRxiv 2024.06.26.597124 DOI: 10.1101/2024.06.26.597124
Li F., Coleman J., Redondo-Morata L.,Kalyana V., Stroeva E., Rothman J., Pincet F.; “Quantitative single-molecule analysis of assembly and Ca2+-dependent disassembly of synaptotagmin oligomers on lipid bilayers”; Communications Biology 7 1608 (2024) DOI: 10.1038/s42003-024-07317-9
Liu Y., Wang R., Chen Q., Chang Y., Chen Q., Fukumoto K., Wang B., Yu J., Luo C., Ma J., Chen X., Murayama Y., Umeda K., Kodera N., Harada Y., Sekine S-I., Li J., Tadakuma H.; “
Organ-Specific Gene Expression Control Using DNA Origami-Based Nanodevices”; ACS Publications 24 (2024) DOI: 10.1021/acs.nanolett.4c02104
Maity B., Kameyama S., Tian J., Pham T., Abe S., Chatani E., Murata K., Ueno T.; “Fusion of amyloid beta with ferritin yields an isolated oligomeric beta-sheet-rich aggregate inside the ferritin cage” Biomater Sci 12(9):2408-2417 DOI: 10.1039/d4bm00173g
Mai X., Wu Z., Guo X., Dong M., Jia L., Ren J.; “Self-Assembly of Human Fibrinogen into Microclot-Mimicking Antifibrinolytic Amyloid Fibrinogen Particles” ACS Appl Bio Mater 8(1):825-834 DOI: 10.1021/acsabm.4c01651
Mei N., Filice C., Lumini J., Liang J., McRae D., Wei W., Sumino A., Fukuma T., Leonenko Z.; “Protective effect of melatonin against amyloid-beta-induced damage in model lipid membranes”; Biophysical Journal 123 3 156A (2024) DOI: 10.1016/j.bpj.2023.11.1059
Miyata K., Adachi K., Miyashita N., Miyazawa K., Foster A., Fukuma T.;”High-Speed Three-Dimensional Scanning Force Microscopy Visualization of Subnanoscale Hydration Structures on Dissolving Calcite Step Edges”; Nano Letter 24 35 (2024) DOI: 10.1021/acs.nanolett.4c02368
Moore S., Burrows R., Warren A., Hambley D., Russell-Pavier F., Martin T., Picco L., Payton O.; “Microstructural analysis of ex-service neutron irradiated stainless steel nuclear fuel cladding by high-speed AFM”; Journal of Nuclear Materials 600 155265 (2024) DOI: 10.1016/j.jnucmat.2024.155265
Morioka S., Oishi T., Hatazawa S., Kakuta T., Ogoshi T., Umeda K., Kodera N., Kurumizaka H., Shibata S.; “High-Speed Atomic Force Microscopy Reveals the Nucleosome Sliding and DNA Unwrapping/Wrapping Dynamics of Tail-less Nucleosomes”; ACS Publications 24 17 (2024) DOI: 10.1021/acs.nanolett.4c00801
Nagano H., Hikishima S., Mori M., Minamikawa J., Muramatsu D., Sakashita Y., Ikeda T., Noguchi-shinohara M., Teplow D., Ono K.; “Globular-shaped Aβ oligomers have diverse mechanisms for promoting Aβ aggregations with the facilitation of fibril elongation” Neurobiol Dis 205:106775. DOI: 10.1016/j.nbd.2024.106775
Ngo K., Vu H., Umeda K., Trinh M.-N., Kodera N., Uyeda T.; “Deciphering the actin structure-dependent preferential cooperative binding of cofilin”; eLife 13:RP95257 (2024) DOI: 10.7554/eLife.95257.3
Nishiyama A., Shimizu M., Narita T., Kodera N., Ozeki Y., Yokoyama A., Mayanagi K., Yamaguchi T., Hakamata M., Kaboso Shaban A., Tateishi Y., Ito K., Matsumoto S.; “Dynamic action of an intrinsically disordered protein in DNA compaction that induces mycobacterial dormancy”; Nucleic Acids Research 52 2 (2024) p.816-830 DOI: 10.1093/nar/gkad1149
Oda H., Nishiguchi S., Song C., Murata K., Uchihashi T., Suzuki Y.; “Nanoscale visualization of Drosophila E-cadherin ectodomain fragments and their interactions using DNA origami nanoblocks”; bioRxiv 2024.09.02.610731 (2024) DOI: 10.1101/2024.09.02.610731
Pan S., Gries K., Engel B., Schroda M., Haselwandter Ch., Scheuring S.; “The cyanobacterial protein VIPP1 forms ESCRT-III-like structures on lipid bilayers”; Nat Struct Mol Biol. (2024) DOI: 10.1038/s41594-024-01367-7
Pfeffer M., DiFrancesco M., Marchesi A., Galluzzi F., Moschetta M., Rossini A., Francia S., Franz C., Fok Y., Valotteau C., Paternò G., Morata L., Vacca F., Mattiello S., Magni A., Maragliano L., Beverina L., Mattioli G., Lanzani G., Baldelli P., Colombo E., Benfenati F.; “Nanoactuator for Neuronal Optoporation”; ACS NANO (2024) DOI: 10.1007/s00339-025-08626-4
Qiu Y., Sajidah E., Kondo S., Narimatsu S., Sandira M., Higashiguchi Y., Nishide G., Taoka A., Hazawa M., Inaba Y., Inoue H., Matsushima A., Okada Y., Nakada M., Ando T., Lim K., Wong R.; “An Efficient Method for Isolating and Purifying Nuclei from Mice Brain for Single-Molecule Imaging Using High-Speed Atomic Force Microscopy”; Cells 13 3 279 (2024) DOI: 10.3390/cells13030279
Qu M., Guo X., Ando T., Yang Q.; “Functional role of carbohydrate-binding modules in multi-modular chitinase OfChtII”; JBC (2024) DOI: 10.1016/j.jbc.2024.107622
Qu M., Kong L., Li P., Zhang A., Ando T., Yang Q.; “High-speed atomic force microscopy reveals opposite traffic of processive chitinases impairs α-chitin biodegradation” Carbohydr Polym 15:352:123176 DOI: 10.1016/j.carbpol.2024.123176
Schaubeder J., Ganser Ch., Nypelö T., Uchihashi T., Spirk S.; “How Resilient is Wood Xylan to Enzymatic Degradation in a Matrix with Kraft Lignin?”; Biomacromolecules 25 6 (2024) DOI: 10.1021/acs.biomac.4c00185
Shapiro A., Joseph N., Mellul N., Horowitz A., Mizrahi B., Bachelet I.; “Folding molecular origami from ribosomal RNA”; journal of Nanobiotechnologie 22,218 (2024) DOI: 10.1186/s12951-024-02489-2
Su J., Song Y., Zhu Z., Huang X., Fan J., Qiao J., Mao F . ; “Cell–cell communication: new insights and clinical implications”; Signal Transduction and Targeted Therapy 9 196 (2024) DOI: 10.1038/s41392-024-01888-z
Sumino A., Sumikama T., Zhao Y., Flechsig H., Umeda K., Kodera N., Konno H., Hattori M., Shibata M.; “High-Speed Atomic Force Microscopy Reveals Fluctuations and Dimer Splitting of the N-Terminal Domain of GluA2 Ionotropic Glutamate Receptor-Auxiliary Subunit Complex” ACS Nano 18(36):25018-25035 DOI: 10.1021/acsnano.4c06295
Takekawa N., Nishikino T., Kishikawa J.-i., Hirose M., Kinoshita M., Kojima S., Minamino T., Uchihashi T., Kato T., Imada K., Homma M.; “Structural analysis of S-ring composed of FliFG fusion proteins in marine Vibrio polar flagellar motors”; mBio 0:e01261-24 (2024) DOI: 10.1128/mbio.01261-24
Tamaki K., Datta S., Hanayama H., Ganser Ch., Uchihashi T., Yagai S.; “Photoresponsive Supramolecular Polymers Capable of Intrachain Folding and Interchain Aggregation”; J. Am. Chem. Soc. 146 32 (2024) p.22166-22171 DOI: 10.1021/jacs.4c07878
Uchihashi T., Nishizawa Y.; “Application of high-speed atomic force microscopy in visualizing the dynamics of synthetic polymers”; Jpn. J. Appl. Phys. 63 040803 (2024) DOI: 10.35848/1347-4065/ad33f2
Umeda K., Yamanaka S., Imamura M., Nagae F., Fukuda S., Watanabe H., Uchihashi T., Takada S., Ando T.; “Submolecular-scale Hairpin DNA Folding Dynamics Studied by High-Speed AFM with Optical Tweezers”; bioRxiv 2024.08.14.605043 (2024) DOI: 10.1101/2024.08.14.605043
Wu X., Miyashita O., Tama F.; “Modeling Conformational Transitions of Biomolecules from Atomic Force Microscopy Images using Normal Mode Analysis” J Phys Chem B 128(39):9363-9372 DOI: 10.1021/acs.jpcb.4c04189
Yagi-Utsumi M., Kanaoka Y., Miyajima S., Itoh S., Yanagisawa K., Okumura H., Uchihashi T., Kato K.; “Single-Molecule Kinetic Observation of Antibody Interactions with Growing Amyloid β Fibrils”; Journal of the American Chemical Society (2024) DOI: 10.1021/jacs.4c08841
Yamada H., Osaka H., Tatsumi N., Araki M., Abe T., Kaihara K., Takahashi K., Takashima E., Uchihashi T., Naruse K., Takei K.; “Direct Binding of Synaptopodin 2-Like Protein to Alpha-Actinin Contributes to Actin Bundle Formation in Cardiomyocytes” Cells 13 1373 (2024) DOI: 10.3390/cells13161373
Yanaka S., Kodama A., Nishiguchi S., Fujita R., Shen J., Boonsri P., Sung D., Isono Y., Yagi H., Miyanoiri Y., Uchihashi T., Kato K.; “Identification of potential C1-binding sites in the immunoglobulin CL domains”; International Immunology 36 8 (2024) p.405-412 DOI:10.1093/intimm/dxae017
Yang K., Chan F.-Y., Watanabe H., Yoshioka S., Inouye Y., Uchihashi T., Ishitobi H., Verma P., Umakoshi T.; “In Situ Real-Time Observation of Photoinduced Nanoscale Azo-Polymer Motions Using High-Speed Atomic Force Microscopy Combined with an Inverted Optical Microscope” Nano Lett 24(9):2805-2811 DOI: 10.1021/acs.nanolett.3c04877
Ye Z., Galvanetto N., Puppulin L., Pifferi S., Flechsig H., Arndt M., Triviño C., Di Palma M., Guo S., Vogel H., Menini A., Franz C., Torre V., Marchesi A.; “Structural heterogeneity of the ion and lipid channel TMEM16F”; Nature communications 15 110 (2024) DOI: 10.1038/s41467-023-44377-7
Yoshida A., Uekusa Y., Suzuki T., Bauer M., Sakai N., Yamauchi Y.; “Enhanced Visualization of Influenza A Virus Entry Using Virus-View Atomic Force Microscopy”; bioRxiv 2024.07.19.603848 (2024) DOI: 10.1101/2024.07.19.603848
Zhang Y., Lillo J., Abdelrasoul M., Wang Y., Arrasate P., Frolov V., Noy A.; “Nanoscale dynamics of Dynamin 1 helices reveals squeeze-twist deformation mode critical for membrane fission” Proc Natl Acad Sci U S A 121(49):e2321514121 DOI: 10.1073/pnas.2321514121

Papers 2023:

Amyot R., Nakamoto K., Kodera N., Flechsig H.; “Predicting the placement of biomolecular structures on AFM substrates based on electrostatic interactions”; Front. Mol. Biosci. 10 (2023) DOI: 10.3389/fmolb.2023.1264161
Andany S., Nievergelt A., Kangül M., Ziegler D., Fantner G.; “A high-bandwidth voltage amplifier for driving piezoelectric actuators in high-speed atomic force microscopy”; Review Of Scientific Instruments 94 9 (2023) p.093703 DOI : 10.1063/5.0159728
Bertouille J., Kasas S., Martin C., Hennecke U., Ballet S., Willaert R.; “Fast Self-Assembly Dynamics of a β-Sheet Peptide Soft Material” Small 19(20):e2206795 DOI: 10.1002/smll.202206795
Burdett H., Foglizzo M., Musgrove L., Kumar D., Clifford G., Campbell L., Heath G., Zeqiraj E., Wilson M.; “BRCA1-BARD1 combines multiple chromatin recognition modules to bridge nascent nucleosomes” Nucleic Acids Res. 51(20):11080-11103. DOI: 10.1093/nar/gkad793
Chen E., Wang C.-H., Liao Y.-T., Chan F.-Y., Kanaoka Y., Uchihashi T., Kato K., Lai L., Chang Y.-W., Ho M.-C., Chen R.; “Visualizing the membrane disruption action of antimicrobial peptides by cryo-electron tomography” Nature communications 14(1):5464 DOI: 10.1038/s41467-023-41156-2
Cho C., Ganser C., Uchihashi T., Kato K., Song J.-J.; “Structure of the human ATAD2 AAA+ histone chaperone reveals mechanism of regulation and inter-subunit communication”; Commun Biol 6 993 (2023) DOI: 10.1038/s42003-023-05373-1
Cisse A., Desfosses A., Stainer S., Kandiah E., Traore D., Bezault A., Schachner-Nedherer A.-L., Leitinger G., Hoerl G., Hinterdorfer P., Gutsche I., Prassl R., Peters J., Kornmueller K.; “Targeting structural flexibility in low density lipoprotein by integrating cryo-electron microscopy and high-speed atomic force microscopy” Int J Biol Macromol 252:126345DOI: 10.1016/j.ijbiomac.2023.126345
Dunajova Z., Mateu B., Radler P., Lim K., Brandis D., Velicky P., Danzl J., Wong R., Elgeti J., Hannezo E., Loose M.; “Chiral and nematic phases of flexible active filaments” Nature physics 10.1038/s41567-023-02218-w DOI: 10.1038/s41567-023-02218-w
Endo M., Sugiyama H.; “Single-Molecule Visualization of B-Z Transition in DNA Origami Using High-Speed AFM” Methods Mol Biol 2651:241-250 DOI: 10.1007/978-1-0716-3084-6_17
Flechsig H., Ando T.; “Protein dynamics by the combination of high-speed AFM and computational modeling” Curr Opin Struct Biol 80:102591 DOI: 10.1016/j.sbi.2023.102591
Fukuda S., Ando T.; “Technical advances in high-speed atomic force microscopy” Biophys Rev 15(6):2045-2058 DOI: 10.1007/s12551-023-01171-5
Ganser Ch., Uchihashi T.; “Measuring mechanical properties with high-speed atomic force microscopy”; Microscopy dfad051 (2023) DOI:10.1093/jmicro/dfad051
Hall D.; “HSAFM-MIREBA - Methodology for Inferring REsolution in biological applications” Anal Biochem 681:115320 DOI: 10.1016/j.ab.2023.115320
Ichibha T., Saritas K., Krogel J., Luo Y., Kent P., Reboredo F.; “Existence of La-site antisite defects in LaMO₃(M = Mn, Fe and Co) predicted with many-body diffusion quantum Monte Carlo” Scientific Reports 13(1):6703 DOI: 10.1038/s41598-023-33578-1
Irvin E., Wang H.; “Single-molecule imaging of genome maintenance proteins encountering specific DNA sequences and structures” DNA Repair 128:103528 DOI: 10.1016/j.dnarep.2023.103528
Jin X., Tanaka H., Jin M., Fujita K., Homma H., Inotsume M., Yong H., Umeda K., Kodera N., Ando T., Okazawa H.; “PQBP5/NOL10 maintains and anchors the nucleolus under physiological and osmotic stress conditions”; Nature Communications 14 9 (2023) DOI: 10.1038/s41467-022-35602-w
Jukic N., Perrino A., Redondo-Morata L., Scheuring S.; “Structure and dynamics of ESCRT-III membrane remodeling proteins by high-speed atomic force microscopy”; J. Biol. Chem. 299 4 104575 (2023) DOI: 10.1016/j.jbc.2023.104575
Karna D., Mano E., Ji J., Kawamata I., Suzuki Y., Mao H.; “Chemo-mechanical forces modulate the topology dynamics of mesoscale DNA assemblies” Nature communications 14(1):6459. DOI: 10.1038/s41467-023-41604-z
Kato S., Takada S., Fuchigami S.; “Particle Smoother to Assimilate Asynchronous Movie Data of High-Speed AFM with MD Simulations” J chem Theory Comput 19(14):4678-4688 DOI: 10.1021/acs.jctc.2c01268
Kikuchi K., Date K., Ueno T. ; “Design of a Hierarchical Assembly at a Solid-Liquid Interface Using an Asymmetric Protein Needle” Langmuir 39(6):2389-2397 DOI: 10.1021/acs.langmuir.2c03146
Kubo S., Umeda K., Kodera N., Takada S.; “Removing the parachuting artifact using two-way scanning data in high-speed atomic force microscopy”; Biophysics and Physicobiology 20 1 e200006 (2023) DOI: 10.2142/biophysico.bppb-v20.0006
Lansky S., Zhang J., Betancourt J., Jiang Y., Kim E., Paknejad N., Nimigean C., Yuan P., Scheuring S.; “A pentameric TRPV3 channel with a dilated pore”; Nature 621(7977) (2023) p.206–214 DOI: 10.1038/s41586-023-06470-1
Lim K., Nishide G., Sajidah E., Yamano T., Qiu Y., Yoshida T., Kobayashi A., Hazawa M., Ando T., Hanayama R., Wong R.; “Nanoscopic Assessment of Anti-SARS-CoV‑2 Spike Neutralizing Antibody Using High-Speed AFM”; Nano Lett. 23 2 (2023) p.619-628 DOI: 10.1021/acs.nanolett.2c04270
Matsunaga y., Fuchigami S., Ogane T., Takada S.; “End-to-end differentiable blind tip reconstruction for noisy atomic force microscopy images” Scientific Reports 13(1):129 DOI: 10.1038/s41598-022-27057-2
Matsuo Y., Uchihashi T., Inada T.; “Decoding of the ubiquitin code for clearance of colliding ribosomes by the RQT complex” Nature communications 14(1):79. DOI: 10.1038/s41467-022-35608-4
Melcrova A., Maity S., Melcr J., Kok N., Gabler M., Eyden J., Stensen W., Svendsen J., Driessen A., Marrink S., Roos W.; “Lateral membrane organization as target of an antimicrobial peptidomimetic compound” Nature communications 14(1):4038 DOI: 10.1038/s41467-023-39726-5
Morioka S., Sato S., Horikoshi N., Kujirai T., Tomita T., Baba Y., Kakuta T., Ogoshi T., Puppulin L., Sumino A., Umeda K., Kodera N., Kurumizaka H., Shibata M.; “High-Speed Atomic Force Microscopy Reveals Spontaneous Nucleosome Sliding of H2A.Z at the Subsecond Time Scale”; Nano Lett. (2023) DOI: 10.1021/acs.nanolett.2c04346
Pan Y., Zhan J., Jiang Y., Xia D., Scheuring S.; “A concerted ATPase cycle of the protein transporter AAA-ATPase Bcs1”; Nature Communications 14 6369 (2023) DOI: 10.1038/s41467-023-41806-5
Puppulin L., Ishikawa J., Sumino A., Marchesi A., Flechsig H., Umeda K., Kodera N., Nishimasu H., Shibata M.; “Dynamics of Target DNA Binding and Cleavage by Staphylococcus aureus Cas9 as Revealed by High-Speed Atomic Force Microscopy” ACS Nano 17(5):4629-4641 DOI: 10.1021/acsnano.2c10709
Naskar S., Merino A., Espadas J., Singh J., Roux A., Colom A., Low H.; “Mechanism for Vipp1 spiral formation, ring biogenesis and membrane repair”; bioRxiv (2023) DOI: 10.1101/2023.09.26.559607
Nishiguchi S., Kasai R., Uchihashi T.; “10.1073/pnas.2302047120” Proc Natl Acad Sci U S A 120(18):e2302047120 DOI: 10.1073/pnas.2302047120
Nishizawa Y., Yokoi H., Uchihashi T., Suzuki D.; “Single microgel degradation governed by heterogeneous nanostructures” Soft Matter. 9(27):5068-5075 DOI: 10.1039/d3sm00216k
Rashid R., Ganser Ch., Akter M., Nasrin S., Rashedul Kabir A., Sada K., Uchihashi T., Kakugo A.; “3D Structure of Ring-shaped Microtubule Swarms Revealed by High-speed Atomic Force Microscopy”; Chemistry Letters 52 2 (2023) DOI: 10.1246/cl.220491
Sanganna Gari R., Pumroy R., Tagiltsev G., Jiang Y., Moiseenkova-Bell V., Scheuring S.; “Intrinsically disordered regions in TRPV2 mediate protein-protein interactions”; Communications Biology 6 966 (2023) DOI: 10.1038/s42003-023-05343-7
Sumino A., Zhao Y., Mukai D., Sumikama T., Puppulin L., Hattori M., Shibata M.; “Antithetic effects of agonists and antagonists on the structural fluctuations of TRPV1 channel”; bioRxiv (2023) DOI: 10.1101/2023.01.22.525118
Sumino A., Sumikama T., Shibata M., Irie K.; “Voltage sensors of a Na+ channel dissociate from the pore domain and form inter-channel dimers in the resting state”; Nature Communications 14 7835 (2023) DOI: 10.1038/s41467-023-43347-3
Sumino A., Sumikama T., Zhao Y., Flechsig H., Umeda K., Kodera N., Hattori M., Shibata M.; “High-speed AFM reveals fluctuations and dimer splitting of the N-terminal domain of GluA2-γ2”; bioRxiv (2023) DOI: 10.1101/2023.12.19.572481
Takashi K., Nishikino T., Kajino H., Kojima S., Uchihashi T., Homma M.; “Ring formation by Vibrio fusion protein composed of FliF and FliG, MS-ring and C-ring component of bacterial flagellar motor in membrane” Biophys Physicobiol 20(2):e200028 DOI: 10.2142/biophysico.bppb-v20.0028
Terahara N., Kodera N.; “Purification of Na+-Driven MotPS Stator Complexes and Single-Molecule Imaging by High-Speed Atomic Force Microscopy” Methods Mol Biol 2646:109-124 DOI: 10.1007/978-1-0716-3060-0_10
Tsujioka S., Sumino A., Nagasawa Y., Sumikama T., Flechsig H., Puppulin L., Tomita T., Baba Y., Kakuta T., Ogoshi T., Umeda K., Kodera N., Murakoshi H., Shibata M.; “Evolutionarily acquired activity-dependent transformation of the CaMKII holoenzyme”; bioRxiv (2023) DOI: 10.1101/2023.01.10.523378
Umeda K., McArthur S., Kodera N.; “Spatiotemporal resolution in high-speed atomic force microscopy for studying biological macromolecules in action”; Microscopy (2023) DOI: 10.1093/jmicro/dfad011
Yang P., Bi Z., Shang G.; “Operando Imaging of Over-Discharge-Induced Surface Morphology Evolutions of LiMn2O4 Submicron-Sized Particles by Electrochemical High-Speed Atomic Force Microscopy” Langmuir 39(39):13801-13806 DOI: 10.1021/acs.langmuir.3c01126
Yu Y., Yoshimura S.; “Self-assembly of CIP4 drives actin-mediated asymmetric pit-closing in clathrin-mediated endocytosis”; Nat Commun 14 4602 (2023) DOI:10.1038/s41467-023-40390-y
Zhang Y., Kitagawa T., Furutani Seiki M., Yoshimura S.; “Yes-associated protein regulates cortical actin architecture and dynamics through intracellular translocation of Rho GTPase-activating protein 18” FASEB J 37(9):e23161 DOI: 10.1096/fj.202201992R

Papers 2022:

Ando T.; “Functional Implications of Dynamic Structures of Intrinsically Disordered Proteins Revealed by High-Speed AFM Imaging”; Biomolecules 12 12 (2022) DOI: 10.3390/biom12121876
Biyani M., Yasuda K., Isogai Y., Okamoto Y., Weilin W., Kodera N., Flechsig H., Sakaki T., Nakajima M., Biyani M.; “Novel DNA Aptamer for CYP24A1 Inhibition with Enhanced Antiproliferative Activity in Cancer Cells”; ACS Appl. Mater. Interfaces 14 16 (2022) p.18064-18078 DOI: 10.1021/acsami.1c22965
Chan F.-Y., Kurosaki R., Ganser C., Takeda T., Uchihashi T.; “Tip-scan high-speed atomic force microscopy with a uniaxial substrate stretching device for studying dynamics of biomolecules under mechanical stress” Rev Sci Instrum. 93(11):113703 DOI: 10.1063/5.0111017
Chan J., Oh Y., Yuan S., Chu H., Yeung M.-L., Canena D., Chung-Sing Chan Ch., Kwok-Man Poon V., Chun-Yiu Chan Ch., Zhang A., Cai J.-P., Ye Z.-W., Wen L., Tsz-Tai Yuen T., Ka-Heng Chik K., Shuai H., Wang Y., Hou Y., Luo C., Chan W.-M., Qin Z., Sit K.-Y., Au W.-K., Legendre M., Zhu R., Hain L., Seferovic H., Tampé R., Kai-Wang To K., Chan K.-H., Thomas D., Klausberger M., Xu Ch., Moon J., Stadlmann J., Penninger J., Oostenbrink Ch., Hinterdorfer P., Yuen K.-Y., Markovitz D.; “A molecularly engineered, broad-spectrum anti-coronavirus lectin inhibits SARS-CoV-2 and MERS-CoV infection in vivo”; Cell Reports Medicine 3 (10):100774 (2022) DOI: 10.1016/j.xcrm.2022.100774
Devasdan D., Baker M., Watts J.; “Quantitative atomic force microscopy: A statistical treatment of high-speed AFM data for quality control applications” Ultramicroscopy 239:113546 DOI: 10.1016/j.ultramic.2022.113546
Domingez C., Garcia-Chamé M., Müller U., Kraus A., Gordiyenko K., Itani A., Haschke H., Lanzerstorfer P., Rabe K., Niemeyer C.; “Linker Engineering of Ligand-Decorated DNA Origami Nanostructures Affects Biological Activity” Small 18(35):e2202704. DOI: 10.1002/smll.202202704
El Alaoui F., Casuso I., Sanchez-Fuentes D., Arpin-Andre Ch., Rathar R., Baecker V., Castro A., Lorca Th., Viaud J., Vassilopoulos S., Carretero-Genevrier A., Picas L.; “Structural organization and dynamics of FCHo2 docking on membranes”; eLife 11:e73156 (2022) DOI: 10.7554/eLife.73156
Endo M.; “Surface Assembly of DNA Origami on a Lipid Bilayer Observed Using High-Speed Atomic Force Microscopy” Molecules DOI: 10.3390/molecules27134224 Front Mol Biosci 9:882989. DOI: 10.3389/fmolb.2022.882989
Fuchigami S., Takada S.; “Inferring Conformational State of Myosin Motor in an Atomic Force Microscopy Image via Flexible Fitting Molecular Simulations” Front Mol Biosci 9:882989 DOI: 10.3389/fmolb.2022.882989
Hall D., Foster A.; “Practical considerations for feature assignment in high-speed afm of live cell membranes”; Biophysics and physicobiology 19 (2022) DOI: 10.2142/biophysico.bppb-v19.0016
Ishimura r., El-Gowily A., Noshiro D., Komatsu-Hirota S., Onon Y., Shindo M., Hatta T., Abe M., Uemura T., Lee-Okada H.-C., Mohamed T., Yokomizo T., Ueno T., Sakimura K., Natsume T., Sorimachi H., Inada T., Waguri S., Noda N., Komatsu M.; “The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3” Nature Communications 13(1):7857 DOI: 10.1038/s41467-022-35501-0
Jiang Y., Thienpont B., Sapuru V., Hite R., Dittman J., Sturgis J., Scheuring S.; “Membrane-mediated protein interactions drive membrane protein organization”; Nature Communications 13(7373) (2022) DOI: 10.1038/s41467-022-35202-8
Jiao F., Dehez F., Ni T., Yu X., Dittman J., Gilbert R., Chipot Ch., Scheuring S.; “Perforin-2 clockwise hand-over-hand pre-pore to pore transition mechanism”; Nature Communications 13(5039) (2022) DOI: 10.1038/s41467-022-32757-4
Jukic N., Perrino A., Roux A., Scheuring S.; “Snf7 spirals sense and alter membrane curvature”; Nature Communications 13(2174) (2022) DOI: 10.1038/s41467-022-29850-z
Kenry, Sun L., Yeo T., Middha E., Gao Y., Teck Lim C., Watanabe S., Liu B.; “In Situ Visualization of Dynamic Cellular Effects of Phospholipid Nanoparticles via High-Speed Scanning Ion Conductance Microscopy”; Small 2203285 (2022) DOI: 10.1002/smll.202203285
Kikuchi K., Fukuyama T., Uchihashi T., Furuta T., Maeda Y., Ueno T.; “Protein Needles Designed to Self-Assemble through Needle Tip Engineering” Small 18(10):e2106401 DOI: 10.1002/smll.202106401
Kobayashi K, Kodera N., Miyata M.; “High-speed Atomic Force Microscopy Observation of Internal Structure Movements in Living Mycoplasma”; Bio-protocol 12(3): e4344 (2022) DOI: 10.21769/BioProtoc.4344
Kodera N., Ando T.; “Visualization of intrinsically disordered proteins by high-speed atomic force microscopy”; Current Opinion in Structural Biology Volume 72 (2022) p.260-266 DOI: 10.1016/j.sbi.2021.11.014
Kodera N., Ando T.; “Guide to studying intrinsically disordered proteins by high-speed atomic force microscopy”; Methods 207 (2022) p.44-56 DOI: 10.1016/j.ymeth.2022.08.008
Liao H., Akhtar I., Werner Ch., Slipets R., Pereda J., Wang J.-H., Raun E. Nørgaard L., Dons F., Hwu E.-T.; “Open-source controller for low-cost and high-speed atomic force microscopy imaging of skin corneocyte nanotextures”; HardwareX 12 e00341 (2022) DOI:10.1016/j.ohx.2022.e00341
Li Z., Kaur P., Lo C.-Y., Chopra N., Smith J., Wang H., Gao Y.; “Structural and dynamic basis of DNA capture and translocation by mitochondrial Twinkle helicase” Nucleic Acids Res 50(20):11965-11978 DOI: 10.1093/nar/gkac1089
Maity S., Trinco G., Buzón P., Anshari Z., Kodera N., Ngo K., Ando T., Slotboom D., Roos W.; “High-speed atomic force microscopy reveals a three-state elevator mechanism in the citrate transporter CitS”; Proceedings of the National Academy of Sciences of the United States of America 119 6 (2022) DOI: 10.1073/pnas.2113927119
Mita M., Matsushima H., Ueda M., Ito H.; “In-situ high-speed atomic force microscopy observation of dynamic nanobubbles during water electrolysis” J Colloid Interface Sci 614:389-395. DOI: 10.1016/j.jcis.2022.01.089
Moretto L., Matusovsky O., Rassier D., Friedman R., Mansson A.; “Multistep orthophosphate release tunes actomyosin energy transduction” Nature communications 13(1):4575. DOI: 10.1038/s41467-022-32110-9
Ngo K., Nguyen P., Furusho H., Miyata M., Shimonaka T., Chau N., Vinh N., Nghia N., Mohammed T., Ichikawa T., Kodera N., Konno H., Fukuma T., Quoc N.; “Unraveling the host-selective toxic interaction of cassiicolin with lipid membranes and its cytotoxicity”; Phytopathology (2022) DOI: 10.1094/PHYTO-09-21-0397-R
Nishiguchi S., Furuta T., Uchihashi T.; “Multiple dimeric structures and strand-swap dimerization of E-cadherin in solution visualized by high-speed atomic force microscopy”; Proceedings of the National Academy of Sciences 119(30) (2022) DOI: 10.1073/pnas.2208067119
Nishizawa Y., Inui T., Namioka R., Uchihashi T., Watanabe T., Suzuki D.; “Clarification of Surface Deswelling of Thermoresponsive Microgels by Electrophoresis” Langmuir 38(51):16084-16093 DOI: 10.1021/acs.langmuir.2c02742
Ogane T., Noshiro D., Ando T., Yamashita A., Sugita Y., Matsunaga Y.; “Hidden Markov Modeling of Molecular Orientations and Structures from High-Speed Atomic Force Microscopy Time-Series Images”; bioRxiv 2022.07.18.500393 (2022) DOI: 10.1101/2022.07.18.500393
Ogane T., Noshiro D., Ando T., Yamashita A., Sugita Y., Matsunaga Y.; “Development of hidden Markov modeling method for molecular orientations and structure estimation from high-speed atomic force microscopy time-series images”; PLoS Computational Biology 18(12):e1010384 (2022) DOI: 10.1371/journal.pcbi.1010384
Ohkubo T., Shiina T., Kawaguchi K., Sasaki D., Inamasu R., Yang Y., Li Z., Taninaka K., Sakaguchi M., Fujimura S., Sekiguchi H., Kuramochi M., Arai T., Tsuda S., Sasaki Y., Mio K.; “Visualizing Intramolecular Dynamics of Membrane Proteins” Int J Mol Sci 23(23):14539. DOI: 10.3390/ijms232314539
Radhakrishnan R., Kizhakkeduth S., Nair V., Ayyappan S., Lakshmi R., Babu N., Prasannajith A., Umeda K., Vijayan V., Kodera N., Manna T.; “Kinetochore-microtubule attachment in human cells is regulated by the interaction of a conserved motif of Ska1 with EB1”; Journal of Biological Chemistry 299 2 102853 (2022) DOI:https://doi.org/10.1016/j.jbc.2022.102853
Sajidah E., Lim K., Yamano T., Nishide G., Qiu Y., Yoshida T., Wang H., Kobayashi A., Hazawa M., Dewi F., Hanayama R., Ando T., Wong R.; “Spatiotemporal tracking of small extracellular vesicle nanotopology in response to physicochemical stresses revealed by HS-AFM”; Journal of Extracellular Vesicles 11(11):12275 (2022) DOI: 10.1002/jev2.12275
Sakai K., Sugano-Nakamura N., Mihara E., Rojas-Chaverra N., Watanabe S., Sato H., Imamura R., Chi-Cheng Voon D., Sakai I., Yamasaki C., Tateno C., Shibata M., Suga H., Takagi J., Matsumoto K.; “Designing receptor agonists with enhanced pharmacokinetics by grafting macrocyclic peptides into fragment crystallizable regions” Nature Biomedical Engineering 7(2):164-176 DOI: 10.1038/s41551-022-00955-6
Sharma M., Biela A., Kowalczyk A., Borzęcka-Solarz K., Piette B., Gaweł S., Bishop J., Kukura Ph., Benesch J., Imamura M., Scheuring S., Heddle J.; “Shape-Morphing of an Artificial Protein Cage with Unusual Geometry Induced by a Single Amino Acid Change”; ACS Nanoscience Au (2022) DOI: 10.1021/acsnanoscienceau.2c00019
Shimizu M., Okamoto C., Umeda K., Watanabe S., Ando T., Kodera N.; “An ultrafast piezoelectric Z-scanner with a resonance frequency above 1.1 MHz for high-speed atomic force microscopy”; Review of Scientific Instruments 93 013701 (2022) DOI: 10.1063/5.0072722
Shukla R., Lavore F., Maity S., Derks M., Jones C., Vermeulen B., Melcrova A., Morris M., Becker L., Wang X., Kumar R., Medeiros-silva J., Van Beekveld R., Bonvin A., Lorent J., Lelli M., Nowick J., MacGillavry H., Peoples A., Spoering A., Ling L., Hughes D., Roos W., Breukink E., Weingarth M.; “Teixobactin kills bacteria by a two-pronged attack on the cell envelope” Nature 608(7922):390-396 DOI: 10.1038/s41586-022-05019-y
Stupka I., Azuma Y., Biela A., Imamura M., Scheuring S., Pyza E., Woźnicka O., Maskel D., Heddle J.,; “Chemically induced protein cage assembly with programmable opening and cargo release”; Science Advances 8(1):eabj9424 (2022) DOI: 10.1126/sciadv.abj9424
Sun Z., Stormberg T., Filliaux S., Lyubchenko Y.; “Three-Way DNA Junction as an End Label for DNA in Atomic Force Microscopy Studies” Int J Mol Sci 23(19):11404 DOI: 10.3390/ijms231911404
Suzuki Y., Kawamata I., Watanabe K., Mano E.; “Lipid bilayer-assisted dynamic self-assembly of hexagonal DNA origami blocks into monolayer crystalline structures with designed geometries” iScience 25(5):104292 DOI: 10.1016/j.isci.2022.104292
Takeda K., Muro I., Kobayashi F., Flechsig H., Kodera N., Ando T., Konno H.; “Structural dynamics of E6AP E3 ligase HECT domain and involvement of flexible hinge loop in ubiquitin chain synthesis mechanism”; bioRxiv 2022.11.18.516873 (2022) DOI:10.1101/2022.11.18.516873
Tsuji A., Yamashita H., Hisatomi O., Abe M.; “Dimerization processes for light-regulated transcription factor Photozipper visualized by high-speed atomic force microscopy” Scientific reports 10.1038/s41598-022-17228-6. DOI: 10.1038/s41598-022-17228-6
Uchiyama T., Uchihashi T., Ishida T., Nakamura A., Vermaas J., Crowley M., Samejima M., Beckham G., Igarashi K.; “Lytic polysaccharide monooxygenase increases cellobiohydrolases activity by promoting decrystallization of cellulose surface”; Science Advances 8 51 (2022) DOI: 10.1126/sciadv.ade5155
Wang D., Nguyen H., Nakayama M., Oshima H., Sun L., Oshima M., Watanabe S.; “Mapping Nanomechanical Properties of Basal Surfaces in Metastatic Intestinal 3D Living Organoids with High-Speed Scanning Ion Conductance Microscopy”; Small 2206213 (2022) DOI: 10.1002/smll.202206213
Wang D., Sun L., Okuda S., Yamamoto D., Nakayama M., Oshima H., Saito H., Kouyama Y., Mimori K., Ando T., Watanabe S., Oshima M.; “Nano-scale physical properties characteristic to metastatic intestinal cancer cells identified by high-speed scanning ion conductance microscope”; Biomaterials 280 (2022) DOI: 10.1016/j.biomaterials.2021.121256
Watanabe-Nakayama T., Ono K.; “Acquisition and processing of high-speed atomic force microscopy videos for single amyloid aggregate observation”; Methods 19 0 (2022) p.4-12 DOI: 10.1016/j.ymeth.2021.06.006
Yamada R., Trang T., Flechsig H., Takeda T., Kodera N., Konno H.; “Importance of annexin V N-terminus for 2D crystal formation and quick purification protocol of recombinant annexin V”; PLoS ONE 17(12):e0278553 (2022) DOI: 10.1371/journal.pone.0278553
Yanaka S., Nishiguchi S., Yogo R., Watanabe H., Shen J., Yagi H., Uchihashi T., Kato K.; “Quantitative Visualization of the Interaction between Complement Component C1 and Immunoglobulin G: The Effect of CH1 Domain Deletion”; Int. J. Mol. Sci. 23 2090 (2022) DOI: 10.3390/ijms23042090
Yoshimi K., Takeshita K., Kodera N., Shibumura S., Yamauchi Y., Omatsu M., Umeda K., Kinihiro Y., Yamamoto M., Mashimo T.; “Dynamic mechanisms of CRISPR interference by Escherichia coli CRISPR-Cas3” Nature communications 13(1):4917 DOI: 10.1038/s41467-022-32618-0
Zhang S., Sadre R., Legg B., Pyles H., Perciano T., Bethel E., Baker D., Rübel O., De Yoreo J.; “Rotational dynamics and transition mechanisms of surface-adsorbed proteins”; PNAS 119 6 (2022) DOI: 10.1073/pnas.2020242119
Zhu R., Canena D., Sikora M., Klausberger M., Seferovic H., Mehdipour A., Hain L., Laurent E., Monteil V., Wirnsberger G., Wieneke R., Tampé R., Kienzl N., Mach L., Mirazimi A., Oh Y. J., Penninger J., Hummer G., Hinterdorfer P.; “Force-tuned avidity of spike variant-ACE2 interactions viewed on the single-molecule level.”; Nature Communications 13 1 (2022) DOI: 10.1038/s41467-022-35641-3

Papers 2021:

Banterle N., Nievergelt A., de Buhr S., Hatzopoulos G., Brillard Ch., Andany S., Hübscher T., Sorgenfrei F., Schwarz U., Gräter F., Fantner G., Gönczy P.; “Kinetic and structural roles for the surface in guiding SAS-6 self-assembly to direct centriole architecture”; Nature Communications 12:6180 (2021) DOI: 10.1038/s41467-021-26329-1
Cafolla C., Voïtchovsky K.; “Real-time tracking of ionic nano-domains under shear flow” Scientific Reports 11(1):19540 DOI: 10.1038/s41598-021-98137-y
Cruz A., den Boer M., Strasser J., Zwarthoff S., Beurskens F., de Haas C., Aerts P., Wang G., de Jong R., Bagnoli F., van Strijp J., van Kessel K., Schuurman J., Preiner J., Heck A., Rooijakkers S.; “Staphylococcal protein A inhibits complement activation by interfering with IgG hexamer formation”; PNAS 118 7 (2021) DOI: 10.1073/pnas.2016772118
Dasgupta B., Miyashita O., Uchihashi T., Tama F.; “Reconstruction of Three-Dimensional Conformations of Bacterial ClpB from High-Speed Atomic-Force-Microscopy Images” Front Mol Biosci :8:704274. DOI: 10.3389/fmolb.2021.704274
Evans C., Baldock S., Hardy J., Payton O., Picco L., Allen M.; “A Non-Destructive, Tuneable Method to Isolate Live Cells for High-Speed AFM Analysis” Microorganisms 9(4):680. DOI: 10.3390/microorganisms9040680
Fukuda S., Ando T.; “Faster high-speed atomic force microscopy for imaging of biomolecular processes”; Rev. Sci. Instrum. 92 033705 (2021) DOI: 10.1063/5.0032948
Hamad N., Yoneda R., So M., Kurokawa R., Nagata T., Katahira M.; “Non-coding RNA suppresses FUS aggregation caused by mechanistic shear stress on pipetting in a sequence-dependent manner” Scientific Reports 11(1):9523 DOI: 10.1038/s41598-021-89075-w
Hatzopoulos G., Kükenshöner T., Banterle N., Favez T., Flückiger I., Hamel V., Andany S., Fantner G., Hantschel O., Gönczy P.; “Tuning SAS-6 architecture with monobodies impairs distinct steps of centriole assembly” Nature communications 12(1):3805DOI: 10.1038/s41467-021-23897-0
Heath G., Kots E., Robertson J., Lansky S., Khelashvili G., Weinstein H., Scheuring S.; “Localization atomic force microscopy”; Nature 594 (2021) p.385-390 DOI: 10.1038/s41586-021-03551-x
Heath G., Lin Y., Matin T., Scheuring S.; “Structural dynamics of channels and transporters by high-speed atomic force microscopy” Methods Enzymol 652:127-159 DOI: 10.1016/bs.mie.2021.03.011
Hirano R., Arimura Y., Kujirai R., Shibata M., Okuda A., Morishima K., Inoue R., Sugiyama M., Kurumizaka H.; “Histone variant H2A.B-H2B dimers are spontaneously exchanged with canonical H2A-H2B in the nucleosome” Communication Biology 4(1):191 DOI: 10.1038/s42003-021-01707-z
Jiao F., Ruan Y., Scheuring S.; “High-speed atomic force microscopy to study pore-forming proteins” Methods Enzymol 649:189-217. DOI: 10.1016/bs.mie.2021.01.033
Kobayashi K., Kodera N., Kasai T., Tahara Y., Toyonaga T., Mizutani M., Fujiwara I., Ando T., Miyata M.; “Movements of Mycoplasma mobile Gliding Machinery Detected by High-Speed Atomic Force Microscopy”; mBio. e0004021 (2021) DOI: 10.1128/mBio.00040-21
Kodera N., Noshiro D., Dora S., Mori T., Habchi J., Blocquel D., Gruet A., Dosnon M., Salladini E., Bignon Ch., Fujioka Y., Oda T., Noda N., Sato M., Lotti M., Mizuguchi M., Longhi S., Ando T.; “Structural and dynamics analysis of intrinsically disordered proteins by high-speed atomic force microscopy”; Nature Nanotechnology 16 (2021) p.181-189 DOI: 10.1038/s41565-020-00798-9
Lim K., Nishide G., Yoshida T., Watanabe-Nakayama T., Kobayashi A., Hazawa M., Hanayama R., Ando T., Wong R.; “Millisecond dynamic of SARS-CoV-2 spike and its interaction with ACE2 receptor and small extracellular vesicles”; Journal of Extracellular Vesicles 10 14 e12170 (2021) DOI: 10.1002/jev2.12170
Marchesi A., Umeda K., Komekawa T., Matsubara T., Flechsig H., Ando T., Watanabe S., Kodera N., Franz C.; “An ultra-wide scanner for large-area high-speed atomic force microscopy with megapixel resolution”; Scientific Reports 11 1 13003 (2021) DOI: 10.1038/s41598-021-92365-y
Moorefield B.; “DNA translocation hinges on cohesion” Nature Structural & Molecular Biology 28 DOI: 10.1038/s41594-021-00688-1
Moore S., Burrow R., Kumar D., Kloucek M. B., Warren A. D., Flewitt P. E. J., Picco L., Payton O. D., Martin T. L.; “Observation of stress corrosion cracking using real-time in situ high-speed atomic force microscopy and correlative techniques” npj Materials Degradation 5 DOI: 10.1038/s41529-020-00149-y
Moore S., Warren A., Burrows R., Payton O., Picco L., Russell-Pavier F., Martin P., Martin T.; “Sample Preparation Methods for Optimal HS-AFM Analysis: Duplex Stainless Steel”; Ultramicroscopy 113210 (2021) DOI: 10.1016/j.ultramic.2021.113210
Nakano M., Sugita Y., Kodera N., Miyamoto S., Muramoto Y., Wolf M., Noda T.; “Ultrastructure of influenza virus ribonucleoprotein complexes during viral RNA synthesis” Communication biology 4(1):858 DOI: 10.1038/s42003-021-02388-4
Nedyalkova L., Tits J., Renaudin G., Wieland E., Mäder U., Lothenbach B.; “Mechanisms and thermodynamic modelling of iodide sorption on AFm phases” J Colloid Interface Sci ;608(Pt 1):683-691 DOI: 10.1016/j.jcis.2021.09.104
Neuenschwander M., Andany S., Kangül M., Hosseini N., Fantner G.; “Self-Actuated Polymer-Based Cantilevers with Sharp Silicon Tips for High-Speed Atomic Force Microscopy”; 2021 21st International Conference on Solid-State Sensors, Actuators and Microsystems (Transducers) (2021) p.22-25 DOI: 10.1109/Transducers50396.2021.9495715.
Nishide G., Lim K., Mohamed M., Kobayashi A., Hazawa M., Watanabe-Nakayama T., Kodera N., Ando T., Wong R.; “High-Speed Atomic Force Microscopy Reveals Spatiotemporal Dynamics of Histone Protein H2A Involution by DNA Inchworming”; Journal of Physical Chemistry Letters 12 15 (2021) p.3837-3846 DOI: 10.1021/acs.jpclett.1c00697
Nishiguchi S., Oda H.; “Structural variability and dynamics in the ectodomain of an ancestral-type classical cadherin revealed by AFM imaging” J Cell Sci 134(14):jcs258388 DOI: 10.1242/jcs.258388
Oduor Otieno L., Alunda B., Kim J., Lee Y.; “Design and Fabrication of a High-Speed Atomic Force Microscope Scan-Head” Sensors (Basel) ;21(2):362 DOI: 10.3390/s21020362
Perrino A., Miyagi A., Scheuring S.; “Single molecule kinetics of bacteriorhodopsin by HS-AFM”; Nature Communications 12(7225) (2021) DOI: 10.1038/s41467-021-27580-2
Puppulin L., Kanayama D., Terasaka N., Sakai K., Kodera N., Umeda K., Sumino A., Marchesi A., Weilin W., Tanaka H., Fukuma T., Suga H., Matsumoto K., Shibata M.; “Macrocyclic Peptide-Conjugated Tip for Fast and Selective Molecular Recognition Imaging by High-Speed Atomic Force Microscopy” ACS Appl Mater Interfaces 13(46):54817-54829 DOI: 10.1021/acsami.1c17708
Sakane A., Yano T., Uchihashi T., Horikawa K., Hara Y., Imoto I., Kurisu S., Yamada H., Takei K., Sasaki T.; “JRAB/MICAL-L2 undergoes liquid–liquid phase separation to form tubular recycling endosomes” Communications Biology ;4(1):551 DOI: 10.1038/s42003-021-02080-7
Sanganna Gari R., Montalvo‐Acosta J., Heath G., Gao X., Nimigean C., Chipot Ch., Scheuring
S.; “Correlation of Membrane Protein Conformational and Functional Dynamics”; Nature Communications 12(4363) (2021) DOI: 10.1038/s41467-021-24660-1
Schächtele M., Kemmler J., Rheinlaender J., Schäffer T.; “Combined High-Speed Atomic Force and Optical Microscopy Shows that Viscoelastic Properties of Melanoma Cancer Cells Change during the Cell Cycle”; Advanced Materials Technologies 7 2101000 (2021) DOI: 10.1002/admt.202101000
Shibata T., Suzuki Y., Sugiyama H., Endo M., Saito H.; “Folding RNA-Protein Complex into Designed Nanostructures” Methods Mol Biol 2323:221-232 DOI: 10.1007/978-1-0716-1499-0_16
Tagiltsev G., Haselwandter Ch., Scheuring S.; “Clathrin-coated-pits form from elastically loaded clathrin lattices”; Science Advances 7(33) (2021); DOI:10.1126/sciadv.abg9934
Tanigawa M., Yamamoto K., Nagatoishi S., Nagata K., Noshiro D., Noda N., Tsumoto K., Maeda T.; “A glutamine sensor that directly activates TORC1” Communications Biology 4(1):1093 DOI: 10.1038/s42003-021-02625-w
Toyonaga T., Kato T., Kawamoto A., Kodera N., Hamaguchi T., Tahara Y., Ando T., Namba K., Miyata M.; “Chained Structure of Dimeric F1-like ATPase in Mycoplasma mobile Gliding Machinery”; mBio 12:e01414-21 (2021) DOI: 10.1128/mBio.01414-21
Umeda K., Okamoto C., Shimizu M., Watanabe S., Ando T., Kodera N.; “Architecture of zero-latency ultrafast amplitude detector for high-speed atomic force microscopy”; Appl. Phys. Lett. 119 181602 (2021) DOI: 10.1063/5.0067224
Yagu-Utsumi M., Aoki K., Watanabe H., Song C., Nishimura S., Satoh T., Yanaka S., Ganser C., Schnapka V., Goh E., Furutani Y., Murata K., Uchihashi T., Arakawa K., Kato K.; “Desiccation-induced fibrous condensation of CAHS protein from an anhydrobiotic tardigrade” Scientific Reports 11(1):21328 DOI: 10.1038/s41598-021-00724-6
Yamashita S., Kamatari Y., Honda R., Niwa A., Tomiata H., Hara A., Kuwata K.; “Monomeric a-synuclein (aS) inhibits amyloidogenesis of human prion protein (hPrP) by forming a stable aS-hPrP hetero-dimer” Prion 15(1):37-43 DOI: 10.1080/19336896.2021.1910176
Yilma N., Kodama Y., Numata K.; “Lipid Membrane Interaction of Peptide/DNA Complexes Designed for Gene Delivery” Langmuir 37(5):1882-1893 DOI: 10.1021/acs.langmuir.0c03320
Yu Y., Yoshimura S.; “Investigating the morphological dynamics of the plasma membrane by high-speed atomic force microscopy” J Cell Sci 134(17):jcs243584 DOI: 10.1242/jcs.243584

Papers 2020:

Bertin A., de Franceschi N., de la Mora E., Maity S., Alqabandi M., Miguet N., di Cicco A., Roos W., Mangenot S., Weissenhorn W., Bassereau P.; “Human ESCRT-III polymers assemble on positively curved membranes and induce helical membrane tube formation”; Nature Communications (2020) DOI: 10.1038/s41467-020-16368-5
Casuso I., Redondo-Morata L., Rico F.; “Biological physics by high-speed atomic force microscopy”; Phil Trans Royal Society A 378 20190604 (2020) DOI: 10.1098/rsta.2019.06
Cruz A., den Boer M., Strasser J., Beurskens F., de Haas C., Aerts P., Wang G., de Jong R., Bagnoli F., van Strijp J., van Kessel K., Schuurman J., Preiner J., Heck A., Rooijakkers S.; “Staphylococcal protein A inhibits complement activation by interfering with IgG hexamer formation”; bioRxiv 212118 (2020) DOI: 10.1101/2020.07.20.212118
Feng Y., Hashiya F., Hidaka K., Sugiyama H., Endo M.; “Direct Observation of Dynamic Interactions between Orientation-Controlled Nucleosomes in a DNA Origami Frame” Chemistry PMID: 32830347 DOI: 10.1002/chem.202003071
Fuchigami S., Niina T., Takada S.; “Particle Filter Method to Integrate High-Speed Atomic Force Microscopy Measurements with Biomolecular Simulations” J Chem Theory Comput 16(10):6609-6619 DOI: 10.1021/acs.jctc.0c00234
Fujioka Y., Alam J., Noshiro D., Mouri K., Ando T., Okada Y., May A., Knorr R., Suzuki K., Ohsumi Y., Noda N.; “Phase separation organizes the site of autophagosome formation”; Nature (2020) DOI: 10.1038/s41586-020-1977-6
Gomez-Varela A., Stamov D., Miranda A., Alves R., Barata-Antunes C., Dambournet D., Drubin D., Paiva S., De Beule P.; “Simultaneous co-localized super-resolution fluorescence microscopy and atomic force microscopy: combined SIM and AFM platform for the life sciences” Scientific Reports 10(1):1122 DOI: 10.1038/s41598-020-57885-z
Ikuta T., Shihoya W., Sugiura M., Yoshida K., Watari M., Tokano T., Yamashita K., Katayama K., Tsunoda S., Uchihashi T., Kandori H., Nureki O.; “Structural insights into the mechanism of rhodopsin phosphodiesterase” Nature communications 11(1):5605 DOI: 10.1038/s41467-020-19376-7
Imai H., Uchiumi T., Kodera N.; “Direct visualization of translational GTPase factor pool formed around the archaeal ribosomal P-stalk by high-speed AFM”; PNAS 117 51 (2020) DOI: 10.1073/pnas.2018975117
Jiao F., Cannon K., Lin Y.-C., Gladfelter A., Scheuring S.; “The hierarchical assembly of septins revealed by high-speed AFM”; Nature Communications 11(5062) (2020) DOI: 10.1038/s41467-020-18778-x
Kawasaki Y., Ariyama H., Motomura H., Fujinami D., Noshiro D., Ando T., Kohda D.; “Two-State Exchange Dynamics in Membrane-Embedded Oligosaccharyltransferase Observed in Real-Time by High-Speed AFM”; Journal of Molecular Biology 432 22 (2020) p.5951-5965 DOI: 10.1016/j.jmb.2020.09.017
Kielar C., Zhu S., Grundmeier G., Keller A.; “Quantitative Assessment of Tip Effects in Single-Molecule High-Speed Atomic Force Microscopy Using DNA Origami Substrates” Angew Chem Int 59(34):14336-14341 DOI: 10.1002/anie.202005884
Konno H., Watanabe-Nakayama T., Uchihashi T., Okuda M., Zhu L., Kodera N., Kikuchi Y., Ando T., Taguchi H.; “Dynamics of oligomer and amyloid fibril formation by yeast prion Sup35 observed by high-speed atomic force microscopy”; Proceedings of the National Academy of Sciences of the United States of America 117 14 (2020) p.7831-7836 DOI: 10.1073/pnas.1916452117
Kretzmann J., W Evans C., Feng L., Lawler N., Norret M., Higgins M., Iyer S.; “Surface Diffusion of Dendronized Polymers Correlates with Their Transfection Potential” Langmuir 36(31):9074-9080. DOI: 10.1021/acs.langmuir.0c01080
Kubo S., Kato S., Nakamura K., Kodera N., Takada S.; “Resolving the data asynchronicity in high-speed atomic force microscopy measurement via the Kalman Smoother”; Scientific Reports 10 1 18393 (2020) DOI: 10.1038/s41598-020-75463-1
Lim K., Kodera N., Wang H., Mohamed M., Hazawa M., Kobayashi A., Yoshida T., Hanayama R., Yano S., Ando T., Wong R.; “High-Speed AFM Reveals Molecular Dynamics of Human Influenza A
Hemagglutinin and Its Interaction with Exosomes”; Nano Lett. 20 9 (2020) p.6320–6328 DOI: 10.1021/acs.nanolett.0c01755
Lim K., Mohamed M., Wang H., Hartono, Hazawa M., Kobayashi A., Voon D.C.-C., Kodera N., Ando T., Wong R.; “Direct visualization of avian influenza H5N1 hemagglutinin precursor and its conformational change by high-speed atomic force microscopy”; Biochimica et Biophysica Acta – General Subjects 1864 2 129313 (2020) DOI: 10.1016/j.bbagen.2019.02.015
Lin Y.-C., Chipot Ch., Scheuring S.; “Annexin-V stabilizes membrane defects by inducing lipid phase transition”; Nature Communications 11 230 (2020) DOI: 10.1038/s41467-019-14045-w
Liu Z., Bi Z., Shang Y., Liang Y., Yang Y., Li X., Zhang C., Shang G.; “Development of electrochemical high-speed atomic force microscopy for visualizing dynamic processes of battery electrode materials” Rev Sci Instrum. 91(10):103701 DOI: 10.1063/5.0024425
Liu Z., Bi Z., Shang Y., Liang Y., Yang Y., Li X., Zhang C., Shang G.; “ Visualization of Electrochemical Cycling-Induced Dimension Change in LiMn2O4 Nanoparticles by High-Speed Atomic Force Microscopy” Langmuir 36(17):4689-4694 DOI: 10.1021/acs.langmuir.0c00490
Maity B., Li Z., Niwase K., Ganser C., Furuta T., Uchihashi T., Lu D., Ueno T.; “Single-molecule level dynamic observation of disassembly of the apo-ferritin cage in solution” Phys Chem 22(33):18562-18572 DOI: 10.1039/d0cp02069a
Maity S., Ottelé J., Santiago G., Frederix P., Kroon P., Markovitch O., Stuart M., Marrink S., Otto S., Roos W.; “Caught in the Act: Mechanistic Insight into Supramolecular Polymerization-Driven Self-Replication from Real-Time Visualization” J Am Chem Soc 142(32):13709-13717 DOI: 10.1021/jacs.0c02635
Matin T., Heath G., Huysmans G., Boudker O., Scheuring S.; “Millisecond dynamics of an unlabeled amino acid transporter”; Nature Communications 11 5016 (2020) DOI: 10.1038/s41467-020-18811-z
Matusovsky O., Kodera N., MacEachen C., Ando T., Cheng Y.-S., Rassier D.; “Millisecond Conformational Dynamics of Skeletal Myosin II Power Stroke Studied by High-Speed Atomic Force Microscopy”; ACS Nano (2020) DOI: 10.1021/acsnano.0c06820
Minato H., Nishizawa Y., Uchihashi T., Suzuki D.; “Thermoresponsive structural changes of single poly(N-isopropyl acrylamide) hydrogel microspheres under densely packed conditions on a solid substrate” Polymer Journal 52 DOI: 10.1038/s41428-020-0372-3
Miyazawa K., Tracey J., Reischl B., Spijker P., Foster A., Rohl A., Fukuma T.; “Tip dependence of three-dimensional scanning force microscopy images of calcite–water interfaces investigated by simulation and experiments”; Nanoscale 12 (2020) p.12856-12868 DOI: 10.1039/d0nr02043e
Mohamed M., Hazawa M., Kobayashi A., Guillaud L., Watanabe-Nakayama T., Nakayama M., Wang H., Kodera N., Oshima M., Ando T., Wong R.; “Spatiotemporally tracking of nano-biofilaments inside the nuclear pore complex core”; Biomaterials (2020) DOI: 10.1016/j.biomaterials.2020.120198
Murata K., Kato K.; “Supramolecular tholos-like architecture constituted by archaeal proteins without functional annotation” Scientific Reports 10(1):1540. DOI: 10.1038/s41598-020-58371-2
Niina T., Fuchigami S., Takada S.; “Flexible Fitting of Biomolecular Structures to Atomic Force Microscopy Images via Biased Molecular Simulations” J Chem Theory Comput 16(2):1349-1358 DOI: 10.1021/acs.jctc.9b00991
Ni T., Jiao F., Yu X., Aden S., Ginger L., Williams S., Bai F., Prazak V., Karia D., Stansfeld Ph., Zhang P., Munson G., Anderluh G., Scheuring S., Gilbert R.; “Structure and mechanism of bactericidal mammalian perforin-2, an ancient agent of innate immunity”; Science Advances 6(5) (2020) DOI: 10.1126/sciadv.aax8286
Okomura M., Noi K., Inaba K. ; “Visualization of structural dynamics of protein disulfide isomerase enzymes in catalysis of oxidative folding and reductive unfolding” Curr Opin Struct Biol 66:49-57 DOI: 10.1016/j.sbi.2020.10.004
Pan Y., Shlyakhtenko L., Lyubchenko Y.; “High-speed atomic force microscopy directly visualizes conformational dynamics of the HIV Vif protein in complex with three host proteins” J Biol Chem 295(34):11995-12001 DOI: 10.1074/jbc.RA120.014442
Qu M., Watanabe-Nakayama T., Sun S., Umeda K., Guo X., Liu Y., Ando T., Yang Q.; “High-Speed Atomic Force Microscopy Reveals Factors Affecting the Processivity of Chitinases during Interfacial Enzymatic Hydrolysis of Crystalline Chitin”; ACS Catal. 10 22 (2020) p.13606-13615 DOI: 10.1021/acscatal.0c02751
Spokoini-Stern R., Stamov D., Jessel H., Aharoni L., Haschke H., Giron J., Unger R., Segal E., Abu-Horowitz A., Bachelet I.; “Visualizing the structure and motion of the long noncoding RNA HOTAIR”; RNA (2020) DOI: 10.1261/rna.074633.120
Sullivan K., Zhang Y., Lopez J., Lowe M., Noy A.; “Carbon nanotube porin diffusion in mixed composition supported lipid bilayers” Scientific reports 10(1):11908 DOI: 10.1038/s41598-020-68059-2
Takahashi Y., Zhou Y., Miyamoto T., Higashi H., Nakamichi N., Takeda Y., Kato Y., Korchev Y., Fukuma T.; “High-Speed SICM for the Visualization of Nanoscale Dynamic Structural Changes in Hippocampal Neurons”; Analytical Chemistry 92 2 (2020) p.2159-2167 DOI: 10.1021/acs.analchem.9b04775
Tatebe H., Lim C., Konno H., Shiozaki K., Shinohara A., Uchihashi T., Furukohri A.; “Rad50 zinc hook functions as a constitutive dimerization module interchangeable with SMC hinge” Nature communications 11(1):370 DOI: 10.1038/s41467-019-14025-0
Tokano T., Kato Y., Sugiyama S., Uchihashi T., Noguchi T.; “Structural Dynamics of a Protein Domain Relevant to the Water-Oxidizing Complex in Photosystem II as Visualized by High-Speed Atomic Force Microscopy” J Phys Chem B. 124(28):5847-5857 DOI: 10.1021/acs.jpcb.0c03892
Uchihashi T., Ganser C.; “Recent advances in bioimaging with high-speed atomic force microscopy” Biophys Rev 12(2):363-369 DOI: 10.1007/s12551-020-00670-z
Uchiyama T., Uchihashi T., Nakamura A., Watanabe H., Kaneko S., Samejima M., Igarashi K.; “Convergent evolution of processivity in bacterial and fungal cellulases”; PNAS 117 33 (2020) p. 19896-19903 DOI: 10.1073/pnas.2011366117
Umakoshi T., Fukuda S., Iino R., Uchihashi T., Ando T.; “High-speed near-field fluorescence microscopy combined with high-speed atomic force microscopy for biological studies”; Biochimica et Biophysica Acta – General Subjects, 1864 2 129325 (2020) DOI: 10.1016/j.bbagen.2019.03.011
Ueno T., Niwase K., Tsubokawa D., Kikuchi K., Takai N., Furuta T., Kawano R., Uchihashi T.; “Dynamic behavior of an artificial protein needle contacting a membrane observed by high-speed atomic force microscopy” Nanoscale 12(15):8166-8173. DOI: 10.1039/d0nr01121e
Viljoen A., Foster S., Fantner G., Hobbs J., Dufrêne Y.; “Scratching the Surface: Bacterial Cell Envelopes at the Nanoscale”; Molecular Biology and Physiology 11 1 (2020) DOI: 10.1128/mBio.03020-19
Visootsat A., Nakamura A., Vignon P., Watanabe H., Uchihashi T., Iino R.; “Single-molecule imaging analysis reveals the mechanism of a high-catalytic-activity mutant of chitinase A from Serratia marcescens”; J. Biol. Chem. jbc.RA119.012078 (2020) DOI: 10.1074/jbc.RA119.012078
Watanabe-Nakayama T., Nawa M., Konno H., Kodera N., Ando T., Teplow D., Ono K.; “Self- and Cross-Seeding on α-Synuclein Fibril Growth Kinetics and Structure Observed by High-Speed Atomic Force Microscopy”; ACS nano 14 8 (2020) p.9979-9989 DOI: 10.1021/acsnano.0c03074
Watanabe-Nakayama T., Sahoo B., Ramamoorthy A., Ono K.; “High-Speed Atomic Force Microscopy Reveals the Structural Dynamics of the Amyloid-β and Amylin Aggregation Pathways” Int J Mol Sci ;21(12):4287 DOI: 10.3390/ijms21124287
Winkler K., Karner A., Horner A., Hannesschlaeger Ch., Knyazev D., Siligan Ch., Zimmermann M., Kuttner R., Pohl P., Preiner J.; “Interaction of the motor protein SecA and the bacterial protein translocation channel SecYEG in the absence of ATP”; Nanoscale Advances (2020) DOI: 10.1039/D0NA00427H
Xi Y., Grundmeier G., Keller A.; “Adsorption of SARS-CoV-2 Spike Protein S1 at Oxide Surfaces Studied by High-Speed Atomic Force Microscopy” Adv Nanobiomed Res 1(2):2000024 DOI: 10.1002/anbr.202000024
Yagi-Utsumi M., Sikdar A., Song C., Park J., Inoue R., Watanabe H., Burton-Smith R., Kozai T., Suzuki T., Kodama A., Ishii K., Yagi H., Satoh T., Uchiyama S., Uchihashi T., Joo K., Lee J., Sugiyama M., Zhang P., Liu X., Liu P., Wang F., Ariyama H., Ando T., Lin J., Wang L., Hu J., Li B., Fan C.; “Capturing transient antibody conformations with DNA origami epitopes” Nature communications 11(1):3114. DOI: 10.1038/s41467-020-16949-4
Zika A., Bernhardt S., Gröhn F.; “Photoresponsive Photoacid-Macroion Nano-Assemblies”; Polymers 12(8) (2020) p.1746 DOI:10.3390/polym12081746
Zuttion F., Colom A., Matile S., Farago D., Pompeo F., Kokavecz J., Galinier A., Sturgis J., Casuso I.; “High-speed atomic force microscopy highlights new molecular mechanism of daptomycin action”; Nat Comm 11 6312 (2020) DOI: 10.1038/s41467-020-19710-z

Papers 2019:

Axmann M., Sezgin E., Karner A., Novacek J., Brodesser M., Röhrl C., Preiner J., Stangl H., Plochberger B.; “Receptor-Independent Transfer of Low Density Lipoprotein Cargo to Biomembranes”; NanoLett. (2019) DOI: 10.1021/acs.nanolett.9b00319
Bohlen J., Cuartero-González À., Pibiri E., Ruhlandt D., Fernández-Domínguez A., Tinnefeld P. Acuna G Plasmon-assisted Förster resonance energy transfer at the single-molecule level in the moderate quenching regime Nanoscale, 2019,11, 7674-7681 DOI: https://doi.org/10.1039/C9NR01204D
Chattrakun K., Mao C., Bariya P., King G.; “Surface-Based Biochemical Activity Assays Complement Atomic Force Microscopy of the E. coli Translocase”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.1625
Dolejsi M., Moni P., Bezik C., Zhou C., de Pablo J., Gleason K., Nealey P.; “Ultrathin initiated chemical vapor deposition polymer interfacial energy control for directed self-assembly hole-shrink applications”; Journal of Vacuum Science & Technology B 37 061804 (2019) DOI: 10.1116/1.5121541
Dubey V., Bozorg B., Wüstner D., Khandelia H., “Mechanism of Cholesterol Sensing in the Niemann Pick Protein (NPC1) using Molecular Dynamics Simulations”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.1626
Endo M., Raghavan G., Hidaka K., Sugiyama H.; “Direct observation and analysis of the dynamics of the photoresponsive transcription factor GAL4”; Angew. Chem. Int. Ed. (2019) DOI: 10.1002/anie.201900610
Ezaki T., Nishinari K., Samejima M., Igarashi K.; “Bridging the Micro-Macro Gap between Single-Molecular Behavior and Bulk Hydrolysis Properties of Cellulase”; Phys. Rev. Lett. 122 9 (2019) DOI: 10.1103/PhysRevLett.122.098102
Gumí-Audenis B., Giannotti M.; “Structural and Mechanical Characterization of Supported Model Membranes by AFM”; Biomimetic Lipid Membranes: Fundamentals, Applications, and Commercialization (2019) p. 1-27 DOI: 10.1007/978-3-030-11596-8_1
Haruyama T., Sugano Y., Kodera N., Uchihashi T., Ando T., Tanaka Y., Konno H., Tsukazaki T.; "Single-unit imaging of membrane protein-embedded nanodiscs from two oriented sides by high-speed atomic force microscopy"; Structure 27 (2019) p.152-160 DOI: 10.1016/j.str.2018.09.005
Heath G., Robertson J., Scheuring S.; “CLC Antiporter Dimerization Dynamics Revealed by Novel Developments in High-Speed AFM”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.1627
Heath G., Scheuring S.; “Advances in high-speed atomic force microscopy (HS-AFM) reveal dynamics of transmembrane channels and transporters”; Current Opinion in Structural Biology 57 (2019) p.93-102 DOI: 10.1016/j.sbi.2019.02.008
Hellmeier J., Motsch V., Platzer R., Karner A., Preiner J., Schuetz G., Huppa J., Sevcsik E.; “Nanoscale Organization and Mobility of Ligands Direct T Cell Activation”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2854
Hosseini N., Neuenschwander M., Peric O., Andany S., Adams J., Fantner G.; “Integration of sharp silicon nitride tips into high-speed SU8 cantilevers in a batch fabrication process”; Beilstein J. Nanotechnol. 10 (2019) p.2357-2363 DOI:10.3762/bjnano.10.226
Huang K., Xhani S., Albrecht A., Poon G.; “Basis of Specificity in Ets-1 DNA Binding Domain to Variable DNA Sequences”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2625
Jiao F., Cannon K., Gladfelter A., Scheuring S.; “Septin Hierarchical Assembly Revealed by High-Speed Atomic Force Microscopy (HS-AFM)”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.1374
Kielar Ch., Xin Y., Xu X., Zhu S., Gorin N., Grundmeier Gu., Möser Ch., Smith D., Keller A,; “Effect of Staple Age on DNA Origami Nanostructure Assembly and Stability”; Molecules 24 14 (2019) 2577 DOI: 10.3390/molecules24142577
Kol M., Williams B., Toombs-Ruane H., Franquelim H., Korneev S., Schroeer Ch., Schwille P., Trauner D., Holthuis J., Frank J.; “Optical manipulation of sphingolipid biosynthesis using photoswitchable ceramides”; eLife Sciences 8 (2019) DOI: 10.7554/eLife.43230
Kori S., Ferry L., Matano S., Jimenji T., Kodera N., Tsusaka T., Matsumura R., Oda T., Sato M., Dohmae N., Ando T., Shinkai Y., Defossez P.-A., Arita K.; "Structure of the UHRF1 Tandem Tudor Domain bound to a methylated non-histone protein, LIG1, reveals rules for binding and regulation"; Structure 27 (2019) p.485-496 DOI: 10.1016/j.str.2018.11.012
Liao H.-S., Lei K., Tseng Y.; “High-speed force mapping based on an astigmatic atomic force microscope”; Measurement Science and Technology 30 2 (2019) DOI: 10.1088/1361-6501/aafa62
Lim K., Mohamed M., Wang H., Hartono, Hazawa M., Kobayashi A., Voon D., Kodera N., Ando T., Wong R.; "Direct visualization of avian influenza H5N1 Hemagglutinin precursor and its conformational change by high-speed atomic force microscopy"; BBA - General Subjects (2019) DOI: 10.1016/j.bbagen.2019.02.015
Lin Y.-C., Guo Y., Miyagi A., Levring J., MacKinnon R., Scheuring S.; “Force-induced conformational changes in PIEZO1”; Nature (2019) DOI: 10.1038/s41586-019-1499-2
Ling J., von Krusenstiern E., Kokona B., Charkoudian L., Londergan C.; “The Placement of Vibrational Probe Labeled Substrates to the Phosphopantetheine Arm of the E.Coli Acyl Carrier Protein for Site Specific Vibrational Spectroscopy”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2621
Maity S., Caillat Ch., De Franceschi N., Alqabandi M., Miguet N., Bassereau P., Weissenhorn W., Roos W.; “Live Action of Escrt III Machineries in Membrane Remodelling: Membrane Deformation & Membrane Scission”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2781
Maity S., Caillat Ch., Miguet N., Sulbaran G., Effantin G.,Schoehn G., Roos W., Weissenhor W.; “VPS4 triggers constriction and cleavage of ESCRT-III helical filaments”; Science Advances 5 4 (2019) DOI: 10.1126/sciadv.aau7198
Marcinkiewicz K.; “AFM in a split second”; Nature Methods 16 (2019) p.24 DOI: 10.1038/s41592-018-0289-3
Maruyama S., Suzuki K., Imamura M., Sasaki H., Matsunami H., Mizutani K., Saito Y., Imai F., Ishizuka-Katsura Y., Kimura-Someya T., Shirouzu M., Uchihashi T., Ando T., Yamato I., Murata T.; “Metastable asymmetrical structure of a shaftless V1 motor”; Science Advances 5 1 (2019) DOI: 10.1126/sciadv.aau8149
Matin T., Heath G., Huysmans G., Boudker O., Scheuring S.; “Millisecond Time Resolution by HS-AFM Line Scanning of Fast GltPh Dynamics”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2994
Matsuda K., Sugawa M., Yamagishi M., Kodera N., Yajima J.; “Visualizing dynamic actin cross-linking processes driven by the actin-binding protein anillin”; FEBS Letters 594 8 (2019) p.1237-1247 DOI: 10.1002/1873-3468.13720
Miyamoto T., Hayashi Y., Yoshida K., Watanabe H., Uchihashi T., Yonezawa K., Shimizu N., Kamikubo H., Hirota S.; “Construction of a quadrangular tetramer and a cage-like hexamer from three-helix bundle-linked fusion proteins”; ACS Synth. Biol. (2019) DOI: 10.1021/acssynbio.9b00019
Miyata K., Kawagoe Y., Tracey J., Miyazawa K., Foster A., Fukuma T.; “Variations in Atomic-Scale Step Edge Structures and Dynamics of Dissolving Calcite in Water Revealed by High-Speed Frequency Modulation Atomic Force Microscopy”; J. Phys. Chem. C (2019) DOI: 10.1021/acs.jpcc.9b05788
Munguira N., Barbas A., Casuso I.; “The activity of the pore-forming toxin lysenin is regulated by crowding”; Nanotechnology 0957-4484 (2019) DOI: 10.1088/1361-6528/ab5e63
Nakamura A., Okazaki K., Furuta T., Sakurai M., Iino R.; “Processive Chitinase is Burnt-Bridge Brownian Motor Operated by Fast Catalysis after Peeling Rail from Crystalline Chitin”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2623
Nasrallah H., Vial A., Pocholle N., Soulier J., Costa L., Godefroy C., Bourillot E., Lesniewska E., Milhiet P.-E.; “Imaging Artificial Membranes Using High-Speed Atomic Force Microscopy”; Methods Mol Biol. 1886 (2019) p.45-59 DOI: 10.1007/978-1-4939-8894-5_3
Nievergelt A., Kammer Ch., Brillard Ch., Kurisinkal E., Bastings M., Karimi A., Fantner G.; “Large‐Range HS‐AFM Imaging of DNA Self‐Assembly through In Situ Data‐Driven Control”; Small Methods 1900031 (2019) DOI:10.1002/smtd.201900031
Nishizawa Y., Matsui S., Urayama K., Kureha T., Shibayama M., Uchihashi T., Suzuki D.; “Non-Thermoresponsive Decanano-sized Domains in Thermoresponsive Hydrogel Microspheres Revealed by Temperature-Controlled High-Speed Atomic Force Microscopy”; Angew Chem Int Ed Engl. (2019) DOI: 10.1002/anie.201903483
Owa M., Uchihashi T., Yanagisawa H., Yamano T., Iguchi H., Fukuzawa H., Wakabayashi K., Ando T., Kikkawa M.; “Inner lumen proteins stabilize doublet microtubules in cilia and flagella”; Nat. Commun. 10 1143 (2019) DOI: 10.1038/s41467-019-09051-x
Pan Y., Shlyakhtenko L., Lyubchenko Y.; “Insight into dynamics of APOBEC3G protein in complexes with DNA assessed by high speed AFM”; bioRxiv 581793 (2019) DOI: 10.1101/581793
Panatala R., Barbato S., Kozai T., Luo J., Kapinos L., Lim R.; “Nuclear Pore Membrane Proteins Self-Assemble into Nanopores”; Biochemistry 58 6 (2019) p.484-488 DOI: 10.1021/acs.biochem.8b01179
Poyton M., Feng A., Ranjan A., Lei Q., Liu S., Wu C., Ha T.; “Observing Histone H2A.Z Exchange at the Single-Molecule Level”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2624
Rangl M., Schmandt N., Perozo E., Scheuring S.; “Real time dynamics of Gating-Related conformational changes in CorA”; . eLife 8:e47322 (2019) DOI: 10.7554/eLife.473
Rico F., Russek A., Gonzalez L., Grubmüller H., Scheuring S.; “Heterogeneous and rate-dependent streptavidin-biotin unbinding revealed by high-speed force spectroscopy and atomistic simulations”; PNAS 116(14):6594-6601 (2019) DOI: 10.1073/pnas.1816909116
Ryu J.-K., Katan A., van der Sluis E., Wisse T., de Groot R., Haering Ch., Dekker C.; “AFM images of open and collapsed states of yeast condensin suggest a scrunching model for DNA loop extrusion”; bioRxiv 867358 (2019) DOI: 10.1101/2019.12.13.867358
Sadoon A., Wang Y.; “Anomalous Non-Gaussian Viscoelastic and Age-Dependent Dynamics of Histone-Like H-NS Proteins in Live Escherichia coli”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2626
Sahoo B., Genjo T., Watanabe-Nakayama T., Stoddard A., Ando T., Yasuhara K., Fierke C., Ramamoorthy A.; "Cationic polymethacrylate-copolymer acts as an agonist for β-amyloid and antagonist for amylin fibrillation"; Chem. Sci. DOI: 10.1039/C8SC05771K
Shibata M., Murakoshi H.; “High-Speed Atomic Force Microscopy Shows Conformational Dynamics of Ca2+/Calmodulin-Dependent Protein Kinase II”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2622
Shinohara K., Yanagisawa M., Makida Y.; “Direct Observation of Long-Chain Branches in a Low-Density Polyethylene”; Nature Scientific Reports 9 9791 (2019) DOI: 10.1038/s41598-019-46035-9
Simeonov S., Schäffer T.; “Ultrafast imaging of cardiomyocyte contractions by combining scanning ion conductance microscopy with a microelectrode array”; Analytical Chemistry 91 (2019) p.9648-9655 DOI: 10.1021/acs.analchem.9b01092
Simeonov S., Schäffer T.; “High-speed scanning ion conductance microscopy for sub-second topography imaging of live cells”; Nanoscale 11 (2019) p.8579-8587 DOI: 10.1039/C8NR10162K
Sone E., Noshiro D., Ikebuchi Y., Nakagawa M., Khan M., Tamura Y., Ikeda M., Oki M., Murali R., Fujimori T., Yoda T., Honma M., Suzuki H., Ando T., Aoki K.; "The clustering-induction of RANKL molecules could stimulate early osteoblast differentiation"; Biophys. Biochem. Res. Commun. 509 (2019) p.435-440 DOI: 10.1016/j.bbrc.2018.12.093
Strasser J., de Jong R., Beurskens F., Wang G., Heck A., Schuurman J., Parren P., Hinterdorfer P., Preiner J.; “Unraveling the Macromolecular Pathways of IgG Oligomerization and Complement Activation on Antigenic Surfaces”; Nano Lett. (2019) DOI: 10.1021/acs.nanolett.9b02220
Strasser J., de Jong R., Beurskens F., Schuurman J., Parren P., Hinterdorfer P., Preiner J.; “Weak Fragment Crystallizable (Fc) Domain Interactions Drive the Dynamic Assembly of IgG Oligomers upon Antigen Recognition”; ACS Nano (2019) DOI: 10.1021/acsnano.9b08347
Sumino A., Sumikama T., Uchihashi T., Oiki S.; “High-speed AFM reveals accelerated binding of agitoxin-2 to a K+ channel by induced fit”; Science Advances 5 7 eaax0495 (2019) DOI: 10.1126/sciadv.aax0495
Sustich S., Afrose F., Greathouse D., Koeppe R.; “Helix Fraying and Orientation of a Transmembrane Peptide having a Long Hydrophobic Core and Anchored by Interfacial Arginine Residues”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2785
Tagiltsev G., Scheuring S.; “High-Speed Atomic Force Microscopy (HS-AFM) of Clathrin-Coated Pits”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.537
Umakoshi T., Fukuda S., Iino R., Uchihashi T., Ando T.; “High-speed near-field fluorescence microscopy combined with high-speed atomic force microscopy for biological studies”; BBA-General Subjects (2019) DOI: 10.1016/j.bbagen.2019.03.011
Valotteau C., Sumbul F., Rico F.; “High-speed force spectroscopy: microsecond force measurements using ultrashort cantilevers”; Biophysical Reviews 11:5 (2019) p.689-699 DOI: 10.1007/s12551-019-00585-4
Wang Y., Saleh N., Chu X., Lindorff-Larsen K.; “A Multi-State Coarse-Grained Simulation Model Captures Conformational Cycling in P-Type ATPases”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.1628
Watanabe S., Kitazawa S., Sun L., Kodera N., Ando T.; “Development of high-speed ion conductance microscopy”; Review of Scientific Instruments 90 12 123704 (2019) DOI: 10.1063/1.5118360
Watts M., Picco L., Russell-Pavier F., Cullen P., Miller T., Bartuś S., Payton O., Skipper N., Tileli V., Howard Ch.; “Production of phosphorene nanoribbons”; Nature 568 (2019) p.216-220 DOI: 10.1038/s41586-019-1074-x
Winkler K., Karner A., Horner A., Hannesschlaeger C., Knyazev D., Siligan C., Zimmermann M., Kuttner R., Pohl P., Preiner J.; “Binding of the motor protein SecA to the bacterial protein translocation channel SecYEG in 2 the absence of ATP”; bioRxiv 799247 (2019) DOI: 10.1101/799247
Xu X., Nakano T., Tsuda M., Kanamoto R., Hirayama R., Uzawa A., Ide H.; “Direct observation of damage clustering in irradiated DNA with atomic force microscopy”; Nucleic Acids Research (2019) DOI: 10.1093/nar/gkz1159
Yoshioka T., Matsushima H., Ueda M.; “In situ observation of Cu electrodeposition and dissolution behavior on Au(111) by high speed AFM”; Electrochimica Acta 302 (2019) p.422-427 DOI: 10.1016/j.electacta.2019.02.044
Zhao Z., Wen P.-C., Coleman J., Yang D., Gouaux E., Tajkhorshid E.; “Ibogaine Binds Human Serotonin Transporter in Multiple Functional States”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.2996

Papers 2018:

Ando T.; “2pM_PL1 High-speed AFM: Visualizing Functional Action of Biological Nano-machines”; Microscopy 67 2 (2018) DOI: 10.1093/jmicro/dfy126
Ando T.; “High-speed atomic force microscopy and its future prospects”; Biophys Rev 10 285 (2018) DOI: 10.1007/s12551-017-0356-5
Ando T. et al.; "Topical Review: The 2018 correlative microscopy techniques roadmap"; J. Phys. D: Appl. Phys. 51 443001 (2018) DOI: 10.1088/1361-6463/aad055
Brouns T., De Keersmaecker H., Konrad S., Kodera N., Ando T., Lipfert J., De Feyter S., Vanderlinden W.;”Free Energy Landscape and Dynamics of Supercoiled DNA by High-Speed Atomic Force Microscopy”; ACS Nano 12 12 (2018) p.11907-11916 DOI: 10.1021/acsnano.8b06994
Charoenwattanasatien R., Tanaka H., Zinzius K., Hochmal A., Mutoh R., Yamamoto D., Hippler M., Kurisu G.; “X-ray crystallographic and high-speed AFM studies of peroxiredoxin 1 from Chlamydomonas reinhardtii”; Acta Cryst. F74 (2018) p.86-91 DOI: 10.1107/S2053230X17018507
Ellis Fisher P., Shen Q., Akpinar B., Davis L., Kwok Hin Chung K., Baddeley D., Šarić A., Melia T., Hoogenboom B., Lin C., Lusk P.; "A Programmable DNA Origami Platform for Organizing Intrinsically Disordered Nucleoporins within Nanopore Confinement"; ACS Nano 12 2 (2018) p.1508-1518 DOI: 10.1021/acsnano.7b08044
Endo M., Sugiyama H.; “Direct Observation of Dynamic Movement of DNA Molecules in DNA Origami Imaged Using High-Speed AFM”; Nanoscale Imaging (2018) DOI: 10.1007/978-1-4939-8591-3_13
Franquelim H., Khmelinskaia A., Sobczak J.-Ph., Dietz H., Schwille P.; “Membrane sculpting by curved DNA origami scaffolds”; Nature Communications 9 811 (2018) DOI: 10.1038/s41467-018-03198-9
Gicheru Y., Chakrapani S.; “Direct visualization of ion-channel gating in a native environment”; PNAS 115 41 (2019) p.10198-10200 DOI: 10.1073/pnas.1814277115
Heath G., Scheuring S.; “High-speed AFM height spectroscopy reveals µs-dynamics of unlabeled biomolecules”; Nature Communications 9 4983 (2018)
Hosoyamada M., Yanai N., Okumura K., Uchihashi T., Kimizuka N.; “Translating MOF chemistry into supramolecular chemistry: soluble coordination nanofibers showing efficient photon upconversion”; Chem. Commun. 54 (2018) p.6828-6831 DOI: 10.1039/C8CC01594E
Iijima K., Kobayashi J., Ishizaka Y.; “Structural alteration of DNA induced by viral protein R of HIV-1 triggers the DNA damage response”; Retrovirology 15 8 (2018) DOI: 10.1186/s12977-018-0391-8
Kawamoto-Ozaki Y., Kotani N., Nakatsuka R., Morii T., Okada T.; “What is High-speed AFM? ~Visualize nano-world!!~”; Microscopy 67 2 (2018) p.i13 DOI: 10.1093/jmicro/dfy051
Kodera N., Ando T.; “Direct Imaging of Walking Myosin V by High-Speed Atomic Force Microscopy”; Molecular Motors 1805 (2018) p.103-122 DOI: 10.1007/978-1-4939-8556-2_6
Liao H.-S., Yang C.-W., Ko H.-C., Hwu E.-T., Hwang I.-S.; “Imaging initial formation processes of nanobubbles at the graphite–water interface through high-speed atomic force microscopy”; Appl. Surf. Sci. 434 (2018) p.913-917 DOI: 10.1016/j.apsusc.2017.11.044
Lyubchenko Y.; “Direct AFM visualization of the nanoscale dynamics of biomolecular complexes”; J. Phys. D: Appl. Phys. 5140 (2018) DOI: 10.1088/1361-6463/aad898
Marchesi A., Gao X., Adaixo R., Rheinberg J., Stahlberg H., Nimigean C., Scheuring S.; “An iris diaphragm mechanism to gate a cyclic nucleotide-gated ion channel”; Nature Communications 9 3978 (2018) DOI: 10.1038/s41467-018-06414-8
Miyagi A., Scheuring S.; “A novel phase-shift-based amplitude detector for a high-speed atomic force microscope”; Rev. Sci. Instrum. 89 083704 (2018) DOI:10.1063/1.5038095
Miyata K., Fukuma T.; “Quantitative comparison of wideband low-latency phase-locked loop circuit designs for high-speed frequency modulation atomic force microscopy”; Beilstein Journal of Nanotechnology 9 (2018) p:1844-1855 DOI: 10.3762/bjnano.9.176
Moore S., Burrows R., Picco L., Martin T., Greenwell S., Scott T., Payton O.; “A study of dynamic nanoscale corrosion initiation events using HS-AFM”; Faraday Discuss. 210 (2018) p.409-428 DOI: 10.1039/C8FD00017D
Mori T., Sugiyama S., Byrne M., Hirschie Johnson C., Uchihashi T., Ando T.; “Revealing circadian mechanisms of integration and resilience by visualizing clock proteins working in real time”; Nature Communications 9 3245 (2018) DOI: 10.1038/s41467-018-05438-4
Nievergelt A., Banterle N., Andany S., Gönczy P., Fantner G.; “High-speed photothermal off-resonance atomic force microscopy reveals assembly routes of centriolar scaffold protein SAS-6”; Nature Nanotechnology (2018) DOI: 10.1038/s41565-018-0149-4
Nievergelt A., Brillard C., Eskandarian H., McKinney J., Fantner G.; “Photothermal Off-Resonance Tapping for Rapid and Gentle Atomic Force Imaging of Live Cells”; International Journal of Molecular Sciences (2018) DOI : 10.3390/ijms19102984
Noshiro D., Ando T.; "Substrate protein dependence of GroEL-GroES interaction cycle revealed by high-speed AFM imaging"; Philosophical Transactions B (2018) DOI: /10.1098/rstb.2017.0180.
Ono K., Nakayama T., Itami M., Takahashi R., Teplow D., Yamada M.; “High-Speed Atomic Force Microscopy Reveals Structural Dynamics of Amyloid β1-42 Aggregates”; Alzheimer's & Dementia: The Journal of the Alzheimer's Association 14 7 (2018) p.752-753 DOI: 10.1016/j.jalz.2018.06.907
Onoa B., Fukuda S., Iwai M., Bustamante C., Niyogi K.; “High-speed atomic force microscopy visualizes mobility of photosynthetic proteins in grana thylakoid membranes”; bioRxiv 426759 (2018) DOI: 10.1101/426759
Plochberger B., Axmann M., Sezgin E., Preiner J., Karner A., Röhrl C., Brodesser M., Eggeling Ch., Schütz G., Stangl H.; “Direct Visualization of Lipoprotein Mediated Cholesterol Transport at the Phospholipid Bilayer Interface”; Biophysical Journal 114 3 (2018) p.347-348
Plochberger B., Röhrl C., Preiner J., Karner A., Axmann M., Novacek J., Sezgin E., Eggeling C., Hinterndorfer P., Schütz G., Stangl H.; “Interaction of lipoprotein particles with lipid bilayer-membranes”; Atherosclerosis 275 (2018) DOI: 10.1016/j.atherosclerosis.2018.06.054
Ravula T., Ishikuro D., Kodera N., Ando T., Anantharamaiah G., Ramamoorthy A.; "Real time monitoring of lipid exchange via fusion of peptide based lipid-nanodiscs"; Chem. Mater 30 (2018) p.3204-3207 DOI: 10.1021/acs.chemmater.8b00946
Redondo-Morata L., Rico F.; "High-Speed Force Spectroscopy of Lipid Bilayer Rupture"; Biophysical Journal 114 3 100a (2018) DOI: 10.1016/j.bpj.2017.11.587
Rodriguez-Ramos J., Faulkner M., Liu L.-N.; “Nanoscale Visualization of Bacterial Microcompartments Using Atomic Force Microscopy”; Methods in molecular biology 1814 (2018) p.373-383 DOI: 10.1007/978-1-4939-8591-3_22
Ruan Y., Kao K., Lefebvre S., Marchesi A., Corringer P., Hite R., Scheuring S.; “Structural titration of receptor ion channel GLIC gating by HS-AFM”; PNAS 115 41 (2018) p.10333-10338 DOI: 10.1073/pnas.1805621115
Russell-Pavier F., Picco L., Day J., Shatil N., Yacoot A., Payton O.; “'Hi-Fi AFM': high-speed contact mode atomic force microscopy with optical pickups”; Measurement Science and Technology 29 10 (2018) DOI: 10.1088/1361-6501/aad771
Schächtele M., Hänel E., Schäffer T.; “Resonance compensating chirp mode for mapping the rheology of live cells by high-speed atomic force microscopy”; Applied Physics Letters 113 093701 (2018) DOI: 10.1063/1.5039911
Shibata M., Inoue K., Ikeda K., Konno M., Singh M., Kataoka C., Abe-Yoshizumi R., Kandori H., Uchihashi T.; “Oligomeric states of microbial rhodopsins determined by high-speed atomic force microscopy and circular dichroic spectroscopy”; Scientific Reports 8 1 8262 (2018) DOI: 10.1038/s41598-018-26606-y
Shin J., Kim J., Park S., Hwan Ha T.; “Kinetic Trans-Assembly of DNA Nanostructures”; ACS Nano 12 9 (2018) p.9423-9432 DOI: 10.1021/acsnano.8b04639
Shinohara K., Makida Y.; “Direct observation of dynamic interaction between a functional group in a single SBR chain and an inorganic matter surface”; Nature Scientific Reports 8 13982 (2018) DOI: https://doi.org/10.1038/s41598-018-32382-6
Shionoya T., Mizuno M., Tsukamoto T., Ikeda K., Seki H., Kojima K., Shibata M., Kawamura I., Sudo Y., Mizutani Y.; “High Thermal Stability of Oligomeric Assemblies of Thermophilic Rhodopsin in a Lipid Environment”; J. Phys. Chem. B (2018) DOI: 10.1021/acs.jpcb.8b04894
Sigdel K., Wilt L., Marsh B., Roberts A., King G.; “The conformation and dynamics of P-glycoprotein in a lipid bilayer investigated by atomic force microscopy”; Biochemical Pharmacology 156 (2018) p.302-311 DOI: 10.1016/j.bcp.2018.08.017
Stylianou A., Lekka M., Stylianopoulos T.; “AFM assessing of nanomechanical fingerprints for cancer early diagnosis and classification: from single cell to tissue level”; Nanoscale 45 10 (2018) p.20930-20945 DOI: 10.1039/C8NR06146G
Sumbul F., Marchesi A., Takahashi H., Scheuring S., Rico F.; “High-Speed Force Spectroscopy for Single Protein Unfolding”; Methods Mol Biol. 1814 (2018) p.243-264 DOI: 10.1007/978-1-4939-8591-3_15
Takahashi H., Rico F., Chipot C., Scheuring S.; "α-Helix Unwinding as Force Buffer in Spectrins"; ACS Nano (2018) DOI: 10.1021/acsnano.7b08973
Takeda T., Kozai T., Yang H., Ishikuro D., Seyama K., Kumagai Y., Abe T., Yamada H., Uchihashi T., Ando T., Takei K.; "Dynamic clustering of dynamin-amphiphysin helices regulates membrane constriction and fission coupled with GTP hydrolysis"; eLife Sciences 7 (2018) DOI: 10.7554/eLife.30246
Terahara N., Inoue Y., Kodera N., Morimoto Y., Uchihashi T., Imada K., Ando T., Namba K., Minamino T.; "Insight into structural remodeling of the FlhA ring responsible for bacterial flagellar type III protein export" ; Sci. Adv. 4 4 eaao7054 (2018) DOI: 10.1126/sciadv.aao7054
Tunuguntla R., Hu A., Zhang Y., Noy A.; “Impact of PEG additives and pore rim functionalization on water transport through sub-1 nm carbon nanotube porins”; Faraday Discuss. 209 (2018) p.359-369 DOI: 10.1039/C8FD00068A
Tunuguntla R., Zhang Y., Henley R., Yao Y.-C., Pham T., Wanunu M., Noy A.; “Response to Comment on “Enhanced water permeability and tunable ion selectivity in subnanometer carbon nanotube porins””; Science 359 6383 (2018) DOI: 10.1126/science.aaq1241
Uchihashi T., Watanabe Y., Nakazaki Y., Yamasaki T., Watanabe H., Maruno T., Ishii K., Uchiyama S., Song C., Murata K., Iino R., Ando T., "Dynamic structural states of ClpB involved in its disaggregation function"; Nature Commun. 9 2147 (2018) DOI: 10.1038/s41467-018-04587-w
Umakoshi T., Udaka H., Uchihashi T., Ando T., Suzuki M.; "Quantum-dot antibody conjugation visualized at the single-molecule scale with high-speed atomic force microscopy"; Colloids and Surfaces B: Biointerfaces 167 (2018) p.267-274 DOI: 10.1016/j.colsurfb.2018.04.015
Uno M., Watanabe-Nakayama T., Konno H., Akagi K., Tsutsumi N., Fukao T., Shirakawa M., Ohnishi H., Tochio H.; “Intramolecular interaction suggests an autosuppression mechanism for the innate immune adaptor protein MyD88”; Chem. Commun.54 (2018) p.12318-12321 DOI: 10.1039/C8CC06480F
Wang P., Michael A., Kwok C.; “Silicon waveguide cantilever displacement sensor for potential application for on-chip high speed AFM”; Front. Optoelectron. 11 1 (2018) p.53–59 DOI: 10.1007/s12200-018-0774-4
Wang Z., Jumper J., Freed K., Sosnick T.; “Fast, Atomic-Level AFM and Magnetic Tweezers Simulations of the Unfolding of Membrane Proteins using a New Membrane Burial Potential with H-Bonding”; Biophysical Journal 116 3 (2019) DOI: 10.1016/j.bpj.2018.11.1629
Yagi-Utsumi M., Sikdar A., Kozai T., Inoue R., Sugiyama M., Uchihashi T., Yagi H., Satoh T., Kato K.; "Conversion of functionally undefined homopentameric protein PbaA into a proteasome activator by mutational modification of its C-terminal segment conformation"; Protein Eng Des Sel. 31 1 (2018) p.29-36 DOI: 10.1093/protein/gzx066
Yoshida A., Sakai N., Uekusa Y., Imaoka Y., Itagaki Y., Suzuki Y., Yoshimura S.; “Morphological changes of plasma membrane and protein assembly during clathrin-mediated endocytosis”; PLoS Biol 16(5) e2004786 (2018) DOI: 10.1371/journal.pbio.2004786
Yoshimasu Y., Ikeda T., Sakai N., Yagi A., Hirayama S., Morinaga Y., Furukawa S., Nakao R.; "Rapid Bactericidal Action of Propolis against Porphyromonas gingivalis"; Journal of Dental Research (2018) DOI: 10.1177/0022034518758034
Zhang Y., Hashemi M., Lv Z., Williams B., Popov K., Dokholyan N., Lyubchenko Y.; "High-speed atomic force microscopy reveals structural dynamics of α-synuclein monomers and dimers"; The Journal of Chemical Physics 148 12 123322 (2018) DOI10.1063/1.5008874
Zou T., Hashiya F., Wei Y., Yu Z., Pandian G., Sugiyama H.; “Direct Observation of H3–H4 Octasome by High‐Speed AFM”; Chemistry 24 60 (2018) p.15998-16002 DOI: 10.1002/chem.201804010
Zuttion F., Redondo-Morata L., Marchesi A., Casuso I.; “High-Resolution and High-Speed Atomic Force Microscope Imaging”; Methods Mol Biol. 1814 (2018) p.181-200 DOI: 10.1007/978-1-4939-8591-3_11

Papers 2017:

Ando T.; "Directly watching biomolecules in action by high-speed atomic force microscopy"; Biophys. Rev. Special Issue for IUPAB Edinburgh Congress (2017) DOI: 10.1007/s12551-017-0281-7
Ando T.; "High-speed Atomic Force Microscopy for Observing Protein Molecules in Dynamic Action", Proceedings of SPIE 10328, Selected Papers from the 31st International Congress on High-Speed Imaging and Photonics (2017) DOI:10.1117/12.2268795
Ando T.; "High-speed atomic force microscopy and its future prospects"; Biophys. Rev. DOI: 10.1007/s12551-017-0356-5
Aybeke E., Belliot G., Lemaire‐Ewing S., Estienney M., Lacroute Y., Pothier P., Bourillot E., Lesniewska, E.; "HS‐AFM and SERS Analysis of Murine Norovirus Infection: Involvement of the Lipid Rafts"; Small 13 1 (2017) DOI: 10.1002/smll.201600918
Cai W, Liu Z., Chen Y., Shang G.; "A Mini Review of the Key Components used for the Development of High-Speed Atomic Force Microscopy"; Science of Advanced Materials Vol. 9 Numb. 1 (2017) p.77-88 DOI: https://doi.org/10.1166/sam.2017.2764
Colom A., Redondo-Morata L., Chiaruttini N., Roux A., Scheuring S.; "Dynamin-dependent membrane constriction and fission observed by High-Speed AFM"; PNAS 114 21 (2017) DOI: 10.1073/pnas.1619578114
Dubrovin E., Schächtele M., Klinov D., Schäffer T.; "Time-Lapse Single-Biomolecule Atomic Force Microscopy Investigation on Modified Graphite in Solution"; Langmuir 33 38 (2017) p.10027-10034 DOI: 10.1021/acs.langmuir.7b02220
Dufrêne Y., Ando T., Garcia R., Alsteens D., Martinez-Martin D., Engel A., Gerber Ch., Müller D.; "Imaging modes of atomic force microscopy for application of molecular and cell biology"; Nat. Nanotechnol. 12 (2017) p.295-307 DOI: 10.1038/NNANO.2017.45
Dukic M., Todorov V., Andany S., Nievergelt A., Yang C., Hosseini N., Fantner G.; "Digitally controlled analog proportional-integral-derivative (PID) controller for high-speed scanning probe microscopy"; Rev Sci Instrum. 88 12 123712 (2017) DOI: 10.1063/1.5010181.
Harada H., Onoda A., Uchihashi T., Watanabe H., Sunagawa N., Samejima M., Igarashi K., Hayashi T.; "Interdomain flip-flop motion visualized in flavocytochrome cellobiose dehydrogenase using high-speed atomic force microscopy during catalysis"; Chemical Science (2017) DOI: 10.1039/C7SC01672G
Harniman R., Plana D., Carter G., Bradley K., Miles M., Fermin D.; "Real-Time Tracking of Metal Nucleation via Local Perturbation of Hydration Layers"; Nature Communications 8 971 (2017) DOI: 10.1038/s41467-017-01087-1
Karner A., Nimmervoll B., Plochberger B., Klotzsch E., Horner A., Knyazev D., Kuttner R., Winkler K., Winter L., Siligan Ch., Ollinger N., Pohl P., Preiner J.; "Tuning membrane protein mobility by confinement into nanodomains"; Nature Nanotechnology 12 3 (2017) p.260-266 DOI:10.1038/nnano.2016.236
Keya J., Inoue D., Suzuki Y., Kozai T., Ishikuro D., Kodera N., Uchihashi T., Kabir A., Endo M., Sada K., Kakugo A.; "High-Resolution Imaging of a Single Gliding Protofilament of Tubulins by HS-AFM" ; Scientific Reports 7 1 (2017) DOI: 10.1038/s41598-017-06249-1
Kim Y.; "An Advanced Characterization Method for the Elastic Modulus of Nanoscale Thin-Films Using a High-Frequency Micromechanical Resonator"; Materials 10 7 (2017) DOI:10.3390/ma10070806
Kim Y.; "An evaluation technique for high-frequency dynamic behavior of a sandwich microcantilever beam"; Journal of Sandwich Structures & Materials (2017) DOI: 10.1177/1099636217708146
Korolkov V., Baldoni M., Watanabe K., Taniguchi T., Besley E., Beton P.; "Supramolecular heterostructures formed by sequential epitaxial deposition of two-dimensional hydrogen-bonded arrays"; Nature Chemistry (2017) DOI: 10.1038/nchem.2824
Legrand B., Salvetat J.-P., Walter B., Faucher M., Théron D., Aimé J.-P.; "Multi-MHz micro-electro-mechanical sensors for atomic force microscopy"; Ultramicroscopy 175 (2017) p.46-57 DOI: 10.1016/j.ultramic.2017.01.005
Liao H.-S., Yang C.-W., Ko H.-C., Hwu E.-T., Hwang I.-S.; "Imaging initial formation processes of nanobubbles at the graphite–water interface through high-speed atomic force microscopy"; Applied Surface Science (2017) DOI: 10.1016/j.apsusc.2017.11.044
Matsui S., Kureha T., Hiroshige S., Shibata M., Uchihashi T., Suzuki D.; "Fast Adsorption of Soft Hydrogel Microspheres on Solid Surfaces in Aqueous Solution"; Angewandte Chemie (2017) DOI: 10.1002/ange.201705808
Mierzwa B., Chiaruttini N., Redondo-Morata L., Moser von Filseck J., König J., Larios J., Poser I., Müller-Reichert T., Scheuring S., Roux A., Gerlich D.; "Dynamic subunit turnover in ESCRT-III assemblies is regulated by Vps4 to mediate membrane remodeling during cytokinesis"; Nature Cell Biology (2017) DOI: 10.1038/ncb3559
Miyata K., Tracey J., Miyazawa K., Haapasilta V., Spijker P., Kawagoe Y., Foster A., Tsukamoto K., Fukuma T.; "Dissolution Processes at Step Edges of Calcite in Water Investigated by High-Speed Frequency Modulation Atomic Force Microscopy and Simulation"; Nano Lett. 17 7 (2017) p.4083-4089 DOI: 10.1021/acs.nanolett.7b00757
Miyazawa K., Watkins M., Shluger A., Fukuma T.; "Influence of ions on two-dimensional and three-dimensional atomic force microscopy at fluorite–water interfaces"; Nanotechnology Vol. 28 Numb. 24 (2017)
Mohamed M., Kobayashi A., Taoka A., Watanabe-Nakayama T., Kikuchi Y., Hazawa M., Minamoto T., Fukumori Y., Kodera N., Uchihashi T., Ando T., Wong R.; "High-Speed Atomic Force Microscopy Reveals Loss of Nuclear Pore Resilience as a Dying Code in Colorectal Cancer Cells"; ACS Nano 11 6 (2017) p.5567-5578 DOI: 10.1021/acsnano.7b00906
Munguira I., Takahashi H., Casuso I., Scheuring S., "Lysenin Toxin Membrane Insertion Is pH-Dependent but Independent of Neighboring Lysenins"; Biophysical Journal 113 9 (2017) p.2029-2036 DOI10.1016/j.bpj.2017.08.056
Nievergelt A., Andany S., Adams J., Hannebelle M., Fantner G.; "Components for high-speed atomic force microscopy optimized for low phase-lag"; Proceedings of 2017 IEEE International Conference on Advanced Intelligent Mechatronics (AIM) (2017) DOI: 10.1109/AIM.2017.8014104
Plochberger B., Röhrl C., Preiner J., Rankl C., Brameshuber M., Madl J., Bittman R., Ros R., Sezgin E., Eggeling Ch., Hinterdorfer P., Stangl H., Schütz G.; "HDL particles incorporate into lipid bilayers – a combined AFM and single molecule fluorescence microscopy study"; Scientific Reports 7 15886 (2017) DOI: 10.1038/s41598-017-15949-7
Rangl M., Rima L., Klement J., Miyagi A., Keller S., Scheuring S.; "Real-time Visualization of Phospholipid Degradation by Outer Membrane Phospholipase A using High-Speed Atomic Force Microscopy"; Journal of Molecular Biology 429 7 (2017) p.977-986 DOI:10.1016/j.jmb.2017.03.004
Ren J., Zou Q.; "High-speed dynamic-mode atomic force microscopy imaging of polymers: an adaptive multiloop-mode approach"; Beilstein J. Nanotechnol. 8 (2017) p.1563-1570 DOI:10.3762/bjnano.8.158
Ricci M., Trewby W., Cafolla C., Voïtchovsky K.; "Direct observation of the dynamics of single metal ions at the interface with solids in aqueous solutions"; Scientific Reports 7 43234 (2017) DOI: 10.1038/srep43234
Rigato A., Miyagi A., Scheuring S., Rico F.; "High-frequency microrheology reveals cytoskeleton dynamics in living cells"; Nature Physics (2017) DOI: 10.1038/NPHYS4104
Ruan Y., Miyagi A., Wang X., Chami M., Boudker O., Scheuring S.; "Direct visualization of glutamate transporter elevator mechanism by high-speed AFM"; PNAS 114 7 (2017) p.1584-1588 DOI: 10.1073/pnas.1616413114
Sadeghian H., Herfst R., Dekker B., Winters J., Bijnagte T., Rijnbeek R.; "High-throughput atomic force microscopes operating in parallel"; Review of Scientific Instruments 88 033703 (2017) DOI: 10.1063/1.4978285
Sakiyama Y., Panatala R., Lim R.; "Structural Dynamics of the Nuclear Pore Complex"; Seminars in Cell and Developmental Biology (2017) DOI: 10.1016/j.semcdb.2017.05.021
Seifert J., Rheinlaender J., Lang F., Gawaz M., Schäffer T.; "Thrombin-induced cytoskeleton dynamics in spread human platelets observed with fast scanning ion conductance microscopy"; Scientific Reports 7 4810 (2017) DOI:10.1038/s41598-017-04999-6
Shibata M., Nishimasu H., Kodera N., Hirano S., Ando T., Uchihashi T., Nureki O.; "Real-space and real-time dynamics of CRISPR-Cas9 visualized by high-speed atomic force microscopy"; Nat. Commun. 8 1430 (2017) DOI: 10.1038/s41467-017-01466-8
Shibata M., Watanabe H., Uchihashi T., Ando T., Yasuda R.; "High-speed atomic force microscopy imaging of live mammalian cells"; Biophysics and Physicobiology Vol. 14 (2017) p.127-135 DOI: 10.2142/biophysico.14.0_127
Terahara N., Kodera N., Uchihashi T., Ando T., Namba K., Minamino T.; "Na+-induced structural transition of MotPS for stator assembly of the Bacillus flagellar motor"; Science Advances 3 11 eaao4119 (2017) DOI: 10.1126/sciadv.aao4119
Uchihashi T., Scheuring S.; "Applications of high-speed atomic force microscopy to real-time visualization of dynamic biomolecular processes"; Biochim Biophys Acta. (2017) DOI: 10.1016/j.bbagen.2017.07.010
Usukura E., Narita A., Yagi A., Sakai N., Uekusa Y., Imaoka Y., Ito S., Usukura J.; "A Cryosectioning Technique for the Observation of Intracellular Structures and Immunocytochemistry of Tissues in Atomic Force Microscopy (AFM)"; Scientific Reports 7 (2017) DOI:10.1038/s41598-017-06942-1
Walter B., Mairiaux E., Faucher M.; "Atomic force microscope based on vertical silicon probes"; Appl. Phys. Lett. 110 243101 (2017) DOI 10.1063/1.4985125
Watanabe S., Ando T.; "High-speed XYZ-nanopositioner for scanning ion conductance microscopy"; Applied Physics Letters 111 11 (2017) DOI: 10.1063/1.4993296
Watanabe-Nakayama T., Kodera N., Konno H., Ono K., Teplow D., Yamada M., Ando T.; "Nano-Space Video Imaging Reveals Structural Dynamics of Fibrous Protein Assembly and Relevant Enzymes"; Biophysical Journal 112 3 (2017) DOI: 10.1016/j.bpj.2016.11.2516
Yang C., Winkler R., Dukic M.,Zhao J., Plank H., Fantner G.; "Probing the Morphology and Evolving Dynamics of 3D Printed Nanostructures Using High-Speed Atomic Force Microscopy"; ACS Applied Materials & Interfaces 9 29 (2017) p.24456-24461 DOI: 10.1021/acsami.7b07762
Zhang Y., Tunuguntla R., Choi P., Noy A.; "Real-time dynamics of carbon nanotube porins in supported lipid membranes visualized by high-speed atomic force microscopy"; Philosophical Transactions of The Royal Society B Biological Sciences 372 (2017) DOI: 10.1098/rstb.2016.0226
Zhang Y., Yoshida A., Sakai N., Uekusa Y., Kumeta M., Yoshimura S.; "In vivo dynamics of the cortical actin network revealed by fast-scanning atomic force microscopy" Microscopy 20 (2017) p.272-282 DOI: 10.1093/jmicro/dfx015

Papers 2016:

Adams J., Erickson B., Grossenbacher J., Brugger J., Nievergelt A., Fantner G.; "Harnessing the damping properties of materials for high-speed atomic force microscopy"; Nature Nanotechnology 11 (2016) p.147-151 DOI:10.1038/nnano.2015.254
Amano K., Liang Y., Miyazawa K., Kobayashi K., Hashimoto K., Fukami K., Nishi N., Sakka T., Onishi H., Fukuma T.; "Number density distribution of solvent molecules on a substrate: a transform theory for atomic force microscopy"; Phys. Chem. Chem. Phys. 18 (2016) p.15534-15544 DOI: 10.1039/C6CP00769D
Ando T., Kodera N.; "Structural and Functional Analyses of IDPs by High-Speed AFM Imaging"; Biophysical Journal 110 3 (2016)
Cadena M., Sung S., Boudouris B., Reifenberger R., Raman A.; "Nanoscale Mapping of Dielectric Properties of Nanomaterials from Kilohertz to Megahertz Using Ultrasmall Cantilevers"; ACS Nano 10 4 (2016) p.4062-4071 DOI: 10.1021/acsnano.5b06893
Dukic M., Winhold M., Schwalb Ch., Adams J., Stavrov V., Huth M., Fantner G.; "Direct-write nanoscale printing of nanogranular tunnelling strain sensors for sub-micrometer cantilevers"; Nature Communications 7 (2016) p.12487 DOI: 10.1038/ncomms12487
Eeftens J., Katan A., Kschonsak M., Hassler M., de Wilde L., Dief E., Haering C., Dekker C.; "Condensin Smc2-Smc4 Dimers Are Flexible and Dynamic"; Cell Reports 14 (2016) p.1-6 DOI: http://dx.doi.org/10.1016/j.celrep.2016.01.063
Hosseini N., Nievergelt A., Adams J., Stavrov V., Fantner G.; "A monolithic MEMS position sensor for closed-loop high-speed atomic force microscopy"; Nanotechnology 27 135705 (2016)
Inoue K., Ito S., Kato Y., Nomura Y., Shibata M., Uchihashi T., Tsunoda S., Kandori H.; "Natural light-driven inward proton pump"; Nat. Commun. 7 13415 (2016) DOI: 10.1038/ncomms13415
Karner A., Nimmervoll B., Plochberger B., Klotzsch E., Horner A., Knyazev D., Kuttner R., Winkler K., Winter L., Siligan Ch., Ollinger N., Pohl P., Preiner J.; "Tuning membrane protein mobility by confinement into nanodomains"; Nature Nanotechnology (2016) DOI:10.1038/nnano.2016.236
Karner A., Nimmervoll B., Plochberger B., Klotzsch E., Horner A., Knyazev D., Kuttner R., Winkler K., Winter L., Siligan Ch., Ollinger N., Pohl P., Preiner J.; "A Novel Platform for Tailoring Membrane Protein Mobility"; Biophysical Journal 110 3 (2016) DOI: http://dx.doi.org/10.1016/j.bpj.2015.11.2671
Khmelinskaia A., Franquelim H., Petrov E., Schwille P.; "Effect of anchor positioning on binding and diffusion of elongated 3D DNA nanostructures on lipid membranes"; J. Phys. D: Appl. Phys. 49 (2016) 194001 DOI:10.1088/0022-3727/49/19/194001
Kumar S.,Cartron M., Mullin N., Qian P., Leggett G., Hunter N., Hobbs J.; "Direct Imaging of Protein Organization in an Intact Bacterial Organelle Using High-Resolution Atomic Force Microscopy"; ACS Nano (2016) DOI: 10.1021/acsnano.6b05647
Liao H., Carvajal N., Fu X., Raftari M., Jin A.; "Developing High-Speed AFM and Nanomechanical Characterizations for Biomedical Investigations"; Biophysical Journal 110 (2016)
Mikheikin A. , Olsen A., Picco L., Payton O., Mishra B., Gimzewski J., Reed J.; "High-Speed Atomic Force Microscopy Revealing Contamination in DNA Purification Systems"; Anal. Chem. 88 5 (2016) p.2527-2532 DOI: 10.1021/acs.analchem.5b04023
Miyagi A., Chipot C., Rangl M.,Scheuring S.; "High-speed atomic force microscopy shows that annexin V stabilizes membranes on the second timescale"; Nature Nanotechnology (2016) DOI:10.1038/nnano.2016.89
Miyagi A.,Scheuring S.; "Automated force controller for amplitude modulation atomic force microscopy"; Rev. Sci. Instrum. 87 053705 (2016) http://dx.doi.org/10.1063/1.4950777
Miyazawa K., Kobayashi N., Watkins M., Shluger A., Amano K., Fukuma T.; "A relationship between three-dimensional surface hydration structures and force distribution measured by atomic force microscopy"; Nanoscale 8 (2016) 7334 DOI: 10.1039/c5nr08092d
Morante K., Bellomio A., Gil-Cartón D., Redondo-Morata L., Sot J.,Scheuring S., Valle M., González-Mañas J. M., Tsumoto K., Caaveiro J.; "Identification of a membrane-bound prepore species clarifies the lytic mechanism of actinoporins"; The Journal of Biological Chemistry 291 (2016) p.19210-19219 doi: 10.1074/jbc.M116.734053
Munguira I., Casuso I., Takahashi H., Rico F., Miyagi A., Chami M., Scheuring S.; "Glasslike Membrane Protein Diffusion in a Crowded Membrane"; ACS Nano 10 (2) (2016) p.2584-2590 DOI: 10.1021/acsnano.5b07595
Nishiguchi S., Yagi A., Sakai N., Oda H.; "Divergence of structural strategies for homophilic E-cadherin binding among bilaterians"; J Cell Sci 129 (2016) p.3309-3319 DOI:10.1242/jcs.189258
Ngunjiri J., Meyers G., Cameron J., Suzuki Y., Jeon H., Lee D., Choi K., Kim J., Im K., Lim H.; " High speed AFM studies of 193 nm immersion photoresists during TMAH development"; Proc. SPIE 9779, Advances in Patterning Materials and Processes XXXIII (2016) DOI:10.1117/12.2218956
Payton O., Picco L., Scott T.; "High-speed atomic force microscopy for materials science"; International Materials Reviews 61 8 (2016) p.473-494 DOI: 10.1080/09506608.2016.1156301
Rangl M., Miyagi A., Kowal J., Stahlberg H., Nimigean C., Scheuring S.; "Real-time visualization of conformational changes within single MloK1 cyclic nucleotide-modulated channels"; Nature Communications 7 12789 (2016) doi:10.1038/ncomms12789
Rankl Ch., Kada G., Wu S., Ghimire A.; "New Atomic Force Microscope Facilitates Faster Workflow for Nanoscale In Situ Applications"; Microscopy Today Vol. 24 Issue 6 (2016) p.26-31 DOI: https://doi.org/10.1017/S1551929516000924
Ruan Y., Rezelj S., Bedina Zavec A., Anderluh G., Scheuring S.; "Listeriolysin O Membrane Damaging Activity Involves Arc Formation and Lineaction -- Implication for Listeria monocytogenes Escape from Phagocytic Vacuole"; PLOS Pathogens 12(4) (2016) DOI:10.1371/journal.ppat.1005597
Sakiyama Y., Mazur A., Kapinos L., Lim R.; "Spatiotemporal dynamics of the nuclear pore complex transport barrier resolved by high-speed atomic force microscopy"; Nature Nanotechnology 11 8 (2016) DOI: 10.1038/nnano.2016.62
Shaik N., Reifenberger R., Raman A.; "Enhancing the optical lever sensitivity of microcantilevers for dynamic atomic force microscopy via integrated low frequency paddles"; Nanotechnology Vol. 27 Numb. 19 (2016)
Shibata M., Uchihashi T., Ando T., Yasuda R.; "Visualization of Living Cells by High-speed Atomic Force Microscopy"; Seibutsu Butsuri 56 3 (2016) p.159-161 DOI: 10.2142/biophys.56.159
Soltani Bozchalooi I., Houck A., AlGhamdi J., Youcef-Toumi K.; "Design and control of multi-actuated atomic force microscope for large-range and high-speed imaging"; Ultramicroscopy 160 (2016) p.213-224 DOI: 10.1016/j.ultramic.2015.10.016
Takahashi H., Miyagi A., Redondo-Morata L., Scheuring S.; "Temperature-Controlled High-Speed AFM: Real-Time Observation of Ripple Phase Transitions"; Small (2016) DOI: 10.1002/smll.201601549
Takeyasu K., Gilmore J., Deguchi K., Hejna J.; "Development of Nano-Biology with Atomic Force Microscopy"; J Nanomed Res 2016 4 3 (2016) DOI: 10.15406/jnmr.2016.04.00089
Uchihashi T., Watanabe H., Fukuda S., Shibata M., Ando T.; "Functional extension of high-speed AFM for wider biological applications"; Ultramicroscopy 160 (2016) p.182-196
Wang A., Vijayraghavan K., Solgaard O., Butte M.; "Fast Stiffness Mapping of Cells Using High-Bandwidth Atomic Force Microscopy"; ACS Nano 10 (2016) p. 257-264
Watanabe-Nakayama T., Itami M., Kodera N., Ando T., Konno H.; "High-speed atomic force microscopy reveals strongly polarized movement of clostridial collagenase along collagen fibrils" Sci. Rep. 6 (2016) 28975 DOI: 10.1038/srep28975
Yamamoto D., Ando T.; "Chaperonin GroEL–GroES Functions as both Alternating and Non-Alternating Engines"; Journal of Molecular Biology 428 (2016) 15 p.3090-3101 DOI: http://dx.doi.org/10.1016/j.jmb.2016.06.017
Yamamoto H., Fujioka Y., Suzuki S., Noshiro D., Suzuki H., Kondo-Kakuta C., Kimura Y., Hirano H., Ando T., Noda N., Ohsumi Y.; "The Intrinsically Disordered Protein Atg13 Mediates Supramolecular Assembly of Autophagy Initiation Complexes"; Dev. Cell 38 86-99 (2016) p.86-99 DOI: 10.1016/j.devcel.2016.06.015.
Yang C.,Yan J., Dukic M., Hosseini N., Zhao J., Fantner G.; "Design of a high-bandwidth tripod scanner for high speed atomic force microscopy"; Scanning 38 6 (2016) p.889-900 DOI: 10.1002/sca.21338

Papers 2015:

Adams J., Erickson B., Grossenbacher J., Brugger J., Nievergelt A., Fantner G.; "Harnessing the damping properties of materials for high-speed atomic force microscopy"; Nature Nanotechnology - Letter (2015)
Davies T., Kodera N., Kaminski Schierle G., Rees E., Erdelyi M., Kaminski C., Ando T., Mishima M.; "CYK4 Promotes Antiparallel Microtubule Bundling by Optimizing MKLP1 Neck Conformation"; PloS Biol. 13(4): e100212 (2015) doi:10.1371/journal.pbio.1002121
Dietz Ch., Schulze M., Voss A., Riesch Ch., Stark R.; "Bimodal frequency-modulated atomic force microscopy with small cantilevers"; Nanoscale 7 (2015) p.1849-1856 DOI: 10.1039/C4NR05907G
Fukuda S., Uchihashi T., Ando T.; "Method of mechanical holding of cantilever chip for tip-scan high-speed atomic force microscopy"; Rev. Sci. Instrum. 86 063703 (2015) DOI: 10.1063/1.4922381
Fukuma T., Reischl B., Kobayashi N., Spijker P., Canova F., Miyazawa K., Foster A.; "Mechanism of atomic force microscopy imaging of three-dimensional hydration structures at a solid-liquid interface"; Physical Review B 92 155412 (2015) DOI: 10.1103/PhysRevB.92.155412
Herfst R., Dekker B., Witvoet G., Crowcombe W., de Lange D., Sadeghian H.; "A miniaturized, high frequency mechanical scanner for high speed atomic force microscope using suspension on dynamically determined points"; Review of Scientific Instruments 86 113703 (2015) DOI: 10.1063/1.4935584
Horner A., Zocher F., Preiner J., Ollinger N., Siligan C., Akimov S., Pohl P.; "Mobility of Single-File Water Molecules in Aquaporins"; Biophysical Journal 108 (2015) DOI:10.1016/j.bpj.2014.11.1005
Horner A., Zocher F., Preiner J., Ollinger N., Siligan C., Akimov S., Pohl P.; "The mobility of single-file water molecules is governed by the number of H-bonds they may form with channel-lining residues"; Sci. Adv. 1 (2015)
Ikai T., Takagi Y., Shinohara K., Maeda K., Kanoh S., "Synthesis of polyisocyanides bearing oligothiophene pendants: higher-order structural control through pendant framework design"; Polymer Journal 47 (2015) p.625–630 DOI:10.1038/pj.2015.42
Imamura M., Uchihashi T., Ando T., Leifert A., Simon U., Malay A., Heddle. J.; "Probing Structural Dynamics of an Artificial Protein Cage Using High-Speed Atomic Force Microscopy"; Nano Lett. 15 (2015) p.1331-1335 DOI: 10.1021/nl5045617
Jiang C., Tang C., Song J.; "The Smallest Resonator Arrays in Atmosphere by Chip-Size-Grown Nanowires with Tunable Q‑factor and Frequency for Subnanometer Thickness Detection"; Nano Lett. 15 (2015) p.1128-1134 DOI: 10.1021/nl504135x
Klapetek P., Valtr M., Picco L., Payton O., Martinek J., Yacoot A., Miles M.; "Large area high-speed metrology SPM system"; Nanotechnology. 26 6 (2015)
Kodera N., Uchida K., Ando T., Aizawa S.; "Two-ball structure of the flagellar hook-length control protein FliK as revealed by high-speed atomic force microscopy"; J. Mol. Biol. 427 (2015) p.406-414 doi: 10.1016/j.jmb.2014.11.007
Laferrere A., Burrows R., Clark R., Glover C., Williams G., Payton O., Picco L.; "In situ imaging of corrosion processes in nuclear fuel cladding"; European Corrosion Congress EUROCORR 2015 (2015) p. 616-625
Lee A., Szymonik M., Hobbs J., Wälti Ch.; "Tuning the translational freedom of DNA for high speed AFM"; Nano Research 8 6 (2015) p.1811-1821 DOI 10.1007/s12274-014-0681-y
Lyubchenko Y., Shlyakhtenko S.; "Chromatin Imaging with Time-Lapse Atomic Force Microscopy"; Methods Mol Biol. 1288 (2015) p.27-42 DOI: 10.1007/978-1-4939-2474-5_3
Matsumoto R., Uemura T., Xu Z., Yamaguchi I., Ikoma T., Tanaka J.; "Rapid oriented fibril formation of fish scale collagen facilitates early osteoblastic differentiation of human mesenchymal stem cells"; J. Biomed Mater Res A. 103 (8) (2015) p.2531-2539 DOI: 10.1002/jbm.a.35387
Minegishi S., Itani T.; "The effect of resist material composition on development behavior"; Proc. SPIE 9425 Advances in Patterning Materials and Processes XXXII 94251I (March 20, 2015) DOI:10.1117/12.2085820
Miyata K., Miyazawa K., Akrami S., Fukuma T.; "Improvements in fundamental performance of liquid-environment atomic force microscopy with true atomic resolution"; Japanese Journal of Applied Physics 54 08LA03 (2015) DOI: http://dx.doi.org/10.7567/JJAP.54.08LA03
Miyazawa K., Izumi H., Watanabe-Nakayama T., Asakawa H., Fukuma T.; "Fabrication of electron beam deposited tip for atomic-scale atomic force microscopy in liquid"; Nanotechnology 26 (2015) doi:10.1088/0957-4484/26/10/105707
Mulvihill E., van Pee K., Mari S., Müller D., Yildiz ö.; "Directly Observing the Lipid-Dependent Self-Assembly and Pore-Forming Mechanism of the Cytolytic Toxin Listeriolysin O"; Nano Lett. 15 10 (2015) p. 6965-6973 DOI: 10.1021/acs.nanolett.5b02963
Ngo K., Kodera N., Katayama E., Kojima S., Nagasaki A., Ando T., Uyeda T.; "Cofilin-induced unidirectional cooperative conformational changes in actin filaments revealed by high-speed AFM"; e-Life 4 (2015)
Nievergelt A., Erickson B., Hosseini N., Adams J., Fantner G.; "Studying biological membranes with extended range high-speed atomic force microscopy"; Scientific Reports 5 (2015) p.11987
Nimmervoll B., Chtcheglova L., Juhasz K., Cremades N., Aprile F.,Sonnleitner A., Hinterdorfer P., Vigh L., Preiner J., Balogi Z.; "Cell surface localised Hsp70 is a cancer specific regulator of clathrin-independent endocytosis"; FEBS Letters 589 (2015)
Oestreichera Z., Taoka A., Fukumori Y.; "A comparison of the surface nanostructure from two different types of gram-negative cells: Escherichia coli and Rhodobacter sphaeroides"; Micron 72 (2015) p.8-14 DOI: 10.1016/j.micron.2015.02.001
Preiner J., Horner A., Karner A., Ollinger N., Siligan C., Pohl P., Hinterdorfer P.; "High-Speed AFM images of thermal motion provide stiffness map of interfacial membrane protein moieties"; Nano Letters 15 (2015) p.759−763
Redondo L., Chiaruttini N., Miyagi A., Colom A., Roux A., Scheuring S.; "High-Speed Atomic Force Microscopy of ESCRT Protein Assembly"; Biophysical Journal 108 2 (2015) DOI: 10.1016/j.bpj.2014.11.1934
Ricci M., Segura J., Erickson B., Fantner G., Stellacci F., Voitchovsky K.; "Growth and dissolution of calcite in the presence of adsorbed stearic acid"; Langmuir 31 27 (2015) p. 7563-7571
Sadeghian H., Dekker B., Herfst R., Winters J., Eigenraam A., Rijnbeek R., Nulkes N.; "Demonstration of parallel scanning probe microscope for high throughput metrology and inspection"; Proc. SPIE 9424, Metrology, Inspection, and Process Control for Microlithography XXIX, 94240O (2015) DOI: 10.1117/12.2085495
Sadeghian H., Herfst R., Winters J., Crowcombe W., Kramer G., van den Dool T., van Es M.; "Development of a detachable high speed miniature scanning probe microscope for large area substrates inspection"; Review of Scientific Instruments 86 113706 (2015) DOI: http://dx.doi.org/10.1063/1.4936270
Santillan J., Shichiri M., Itani T.; "The effect of resist dissolution process on pattern formation variability: an in situ analysis using high-speed atomic force microscopy"; Proc. SPIE 9425 Advances in Patterning Materials and Processes XXXII 942506 (March 20, 2015) DOI:10.1117/12.2085746
Santillan J., Shichiri M., Itani T.; "In situ characterization of nano-scale pattern roughness during resistdissolution process"; Microelectronic Engineering Volume 143 1 (2015) p.64-68
Schlecker B., Eichel A., Ortmanns M., Fantner G., Anders J.; "Modeling and design of high-speed FM-AFM driver electronics using cadence virtuoso ® and simulink ®"; Ifac Proceedings Volumes 48 (2015) p.671-672. DOI: 10.1016/j.ifacol.2015.05.147
Schlesinger I., Kuchuk K., Sivan U.; "An ultra-low noise optical head for liquid environment atomic force microscopy"; Review of Scientific Instruments 86 083705 (2015) DOI: http://dx.doi.org/10.1063/1.4928497
Schuh A., Soltani Bozchalooi I., Rangelow I., Youcef-Toumi K.; "Estimator based multi-eigenmode control of cantilevers in multifrequency Atomic Force Microscopy"; Proceedings of the American Control Conference 2015 (2015) DOI: 10.1109/ACC.2015.7171011
Schuh A., Soltani Bozchalooi I., Rangelow I., Youcef-Toumi K.; "Multi-eigenmode control for high material contrast in bimodal and higher harmonic atomic force microscopy"; Nanotechnology 26(23):235706 (2015) DOI: 10.1088/0957-4484/26/23/235706
Shibata M., Uchihashi T., Ando T., Yasuda R.; "Long-tip high-speed atomic force microscopy for nanometer-scale imaging in live cells"; Sci. Rep. 5 (2015) DOI:10.1038/srep08724
Soltani Bozchalooi I., Houck A., Youcef-Toumi K.; "A study on the effectiveness of proportional-integral-derivative control in multi-actuated atomic force microscopy"; Proceedings of the American Control Conference 2015 (2015) p.3478-3483 DOI: 10.1109/ACC.2015.7171869
Song Y.-P., Wu S., Xu L.-Y., Zhang J.-M., Dorantes-Gonzalez D., Fu X., Hu X.-D.; "Calibration of the effective spring constant of ultra-short cantilevers for a high-speed atomic force microscope"; Measurement Science and Technology 26 6 (2015) DOI: 10.1088/0957-0233/26/6/065001
Stamov D., Stock E., Franz C., Jähnke T., Haschke H.; "Imaging collagen type I fibrillogenesis with high spatiotemporal resolution"; Ultramicroscopy 149 (2015) p.86-94
Sumino A., Yamamoto D., Sumikama T., Iwamoto M., Dewa T., Oiki S.; "Structure and Dynamics of Membrane-embedded KcsA Potassium Channel Revealed by Atomic Force Microscopy"; Seibutsu Butsuri 55 1 (2015) DOI: 10.2142/biophys.55.005
Suzuki T., Kawaguchi A., Ainai A., Tamura S., Ito R., Multihartina P., Setiawaty V., Pangesti K., Odagiri T., Tashiro M., Hasegawaa H.; "Relationship of the quaternary structure of human secretory IgA to neutralization of influenza virus"; PNAS 112(25) (2015) p.7809-7814 DOI:10.1073/pnas.1503885112.
Suzuki Y., Endo M., Sugiyama H.; "Lipid-bilayer-assisted two-dimensional self-assembly of DNA origami nanostructures"; Nat. Commun. 6:8052 (2015) DOI: 10.1038/ncomms9052
Takeda K., Uchihashi T., Watanabe H., Ishida T., Igarashi K., Nakamura N., Ohno H.; "Real-time dynamic adsorption processes of cytochrome c on an electrode observed through electrochemical high-speed atomic force microscopy"; PLoS One 10 (2015) DOI:10.1371/journal.pone.0116685
Yoshida A., Sakai N., Uekusa Y., Deguchi K., Gilmore J., Kumeta M., Ito S., Takeyasu K.; "Probing in vivo dynamics of mitochondria and cortical actin networks using high-speed atomic force/fluorescence microscopy"; Genes to Cells 20 (2015) p.85-94
Zhang K., Hatano T., Nguyen Tien T., Herrmann G., Christopher E., Burgess S., Miles M.; "An adaptive non-raster scanning method in Atomic Force Microscopy for simple sample shapes"; Measurement Science and Technology 26 (2015) p.035401

Papers 2014:

Adams J., Nievergelt A., Erickson B., Yang C., Dukic M., Fantner G.; "High-speed imaging upgrade for a standard sample scanning atomic force microscope using small cantilevers"; Review of Scientific Instruments 85 093702 (2014) 093702 doi: 10.1063/1.489546
Akrami S., Miyata K., Asakawa H., Fukuma T.; "High-speed Z tip scanner with screw cantilever holding mechanism for atomic-resolution atomic force microscopy in liquid"; Rev. Sci. Instrum. 86 (2014) p. 126106
Ando T., Uchihashi T., Scheuring S.; "Filming biomoleculear processes by high-speed atomic force microscopy"; Chem. Rev. 114 (2014) p.3120-3188 doi:0.1021/cr4003837
Ando T., "High-speed AFM imaging", Curr. Opin. Struct. Biol. 28 (2014) p.63-68 DOI:10.1016/j.sbi.2014.07.011
Braunsmann C., Prucker V., Schäffer T.; "Optical knife-edge displacement sensor for high-speed atomic force microscopy"; Applied Physics Letters 104 (2014) 103101
Braunsmann C., Seifert J., Rheinlaender J., Schäffer T.; "High-speed force mapping on living cells with a small cantilever atomic force microscope"; Review of Scientific Instruments 85 (2014) 073703
Eghiaian F., Rico F., Colom A., Casuso I., Scheuring S.; "High-speed atomic force microscopy: Imaging and force spectroscopy"; FEBS letters Vol 588 Issue 19 (2014) p.3631-3638
Endo M., Sugiyama H.; "Single-Molecule Imaging of Dynamic Motions of Biomolecules in DNA Origami Nanostructures Using High-Speed Atomic Force Microscopy"; Acc. Chem. Res. 47 (6) (2014) p.1645-1653
Fujita Y., Furushima R., Ohno H., Sagawa F., Inoue T.; "Cell-surface receptor control that depends on the size of a synthetic equilateral-triangular RNA-protein complex"; Scientific Reports 4 6422 (2014) DOI:10.1038/srep06422
Herfst R., Klop W., Eschen M., van den Dool T., Koster N., Sadeghian H.; "Systematic characterization of optical beam deflection measurement system for micro and nanomechanical systems"; Measurement Volume 56 (2014) p.104-116 DOI: https://doi.org/10.1016/j.measurement.2014.06.016
Igarashi K., Uchihashi T., Uchiyama T., Sugimoto H., Wada M., Suzuki K., Sakuda S., Ando T., Watanabe T., Samejima M.; "Two-way traffic of glycoside hydrolase family 18 processive chitinases on crystalline chitin"; Nature Communications 5 (2014) 3975
Ishino S., Yamagami T., Kitamura M., Kodera N., Mori T., Ando T., Goda N., Hiroaki H., Ishino Y.; "Multiple Interactions of the Intrinsically Disordered Region between the Helicase and Nuclease Domains of the Archaeal Hef Protein"; J. Biol. Chem. 289 (2014) p.21627-21639
Karvinen K., Moheimani S.; "Modulated–demodulated control: Q control of an AFM microcantilever"; Mechatronics Vol. 24 Issue 6 (2014) p.661-671 DOI: https://doi.org/10.1016/j.mechatronics.2013.11.011
Katan A., Vlijm R., Lusser A., Dekker C.; “Dynamics of nucleosomal structures measured by High-Speed Atomic Force Microscopy”; Small 11 (2014) p.976-984 DOI: 10.1002/smll.201401318
Kodera N., Ando T.; "The path to visualization of walking myosin V by high-speed atomic force microscopy"; Biophys. Rev (2014) p.237-260 DOI:10.1007/s12551-014-0141-7
Liao H.-S., Chen Y.-H., Ding R.-F., Huang H.-F., Wang W.-M., Hwu E.-T., Huang K.-Y., Chang C.-S., Hwang I.-S.; "High-speed atomic force microscope based on an astigmatic detection system"; Review of Scientific Instruments 85 (2014) 103710 DOI: 10.1063/1.4898019
Leung C., Dudkina N., Lukoyanova N., Hodel A., Farabella I., Pandurangan A., Jahan N., Pires Damaso M., Osmanović D., Reboul C., Dunstone M., Andrew P., Lonnen R., Topf M., Saibil H., Hoogenboom B.; "Stepwise visualization of membrane pore formation by suilysin, a bacterial cholesterol-dependent cytolysin"; eLife (2014) DOI: 10.7554/eLife.04247
Nakamura A., Watanabe H., Ishida T., Uchihashi T., Wada M., Ando T., Igarashi K., Samejima M.; "Trade-off between processivity and hydrolytic velocity of cellobiohydrolases at the surface of crystalline cellulose"; J. Am. Chem. Soc. 136 (2014) p.4584-4592
Nievergelt A., Adams J., Odermatt P., Fantner G.; "High-frequency multimodal atomic force microscopy"; Beilstein J. Nanotechnol. 2014 5 (2014) p.2459-2467 doi:10.3762/bjnano.5.255
Ngo K., Kodera N., Nagasaki A., Ando T., Uyeda T.; "Video Imaging of Cofilin-Induced Actin Filament Severing by High Speed AFM"; Biophysical Journal 106 2 (2014)
Plesa C., Ananth A., Linko V.,Gülcher C., Katan A., Dietz H., Dekker C.; "Ionic Permeability and Mechanical Properties of DNA Origami Nanoplates on Solid-State Nanopores"; ACS Nano 7 (1) (2014) p.35-43
Plochberger B., Schuetz G., Röhrl C., Preiner J., Sezgin E., Brameshuber M., Weghuber J., Wieser S., Rankl C., Ruprecht V., MadlJ., Bittman R., Hinterdorfer P., Stangl H.; "HDL-Lipid Uptake is Regulated by Elastic Properties of the Plasma Membrane"; Biophysical Journal 106 (2014) DOI:10.1016/j.bpj.2013.11.2216
Preiner J., Kodera N., Tang J., Ebner A., Brameshuber M., Blaas D., Ilk N., Gruber H.J., Ando T., Hinterdorfer P.; "IgGs are made for walking on bacterial and viral surfaces"; Nature Communications 5 (2014) 4394. DOI: 10.1038/ncomms5394
Rajendran A., Endo M., Sugiyama H.; "State-of-the-Art High-Speed Atomic Force Microscopy for Investigation of Single-Molecular Dynamics of Proteins"; Chem. Rev. 114 (2) (2014) p.1493-1520
Rajendran A., Endo M., Hidaka K., Tran P., Teulade-Fichou M., Mergny J.-L., Sugiyama H.; "G-quadruplex-binding ligand-induced DNA synapsis Inside a DNA Origami Frame"; RSC. Adv. 4 (2014) p.6346-6355
Rajendran A., Endo M., Hidaka K., Sugiyama H.; "Direct and Single-Molecule Visualization of the Solution-State Structures of G-Hairpin and G-Triplex Intermediates"; Angew. Chem. Int. Ed. 53 16 (2014) p.4107-4112
Sadeghian H., Herfst R., Van den Dool T., Crowcombe W., Winters J., Kramer G.; "High-throughput parallel SPM for metrology, defect, and mask inspection"; Proceedings of SPIE 9231: 30th European Mask and Lithography Conference, Dresden, Germany, (2014) DOI:10.1117/12.2065939
Santillan J., Shichiri M., Itani T.; "An in situ analysis of resist dissolution in alkali-based and organic solvent-based developers using high speed atomic force microscopy"; Proc. SPIE 9051 Advances in Patterning Materials and Processes XXXI 90510O (March 27, 2014) DOI:10.1117/12.2045886
Santillan J., Yamada K., Itani T.; "In situ analysis of negative-tone resist pattern formation using organic-solvent-based developer process"; Appl. Phys. Express 7 (2014) 016501DOI:10.7567/APEX.7.016501
Scheuring S., Rico F., Colom A., Casuso I.; "High-Speed Atomic Force Microscopy: Integration with Optical Microscopy and High-Speed Force Spectroscopy"; Biophysical Journal 106 2 (2014) p.797
Schlecker B., Dukic M., Erickson B., Ortmanns M., Fantner G.; "Single-Cycle-PLL Detection for Real-Time FM-AFM Applications"; IEEE TRANSACTIONS ON BIOMEDICAL CIRCUITS AND SYSTEMS 8 2 (2014) p.206-215
Shibafuji Y., Nakamura A., Uchihashi T., Sugimoto N., Fukuda S., Watanabe H., Samejima M., Ando T., Noji H., Koivula A., Igarashi K., Iino R.; "Single-molecule imaging analysis of elementary reaction steps of Trichoderma Reesei cellobiohydrolase I (Cel7A) hydrolyzing crystalline cell"; J. Biol. Chem. 289 (2014) p.14056-14065
Soltani Bozchalooi I., Youcef-Toumi K.; "Control design for division and compensation with application to high-speed/large-range nano-positioning"; Proceedings of the American Control Conference (2014) DOI: 10.1109/ACC.2014.6859262
Soltani Bozchalooi I., Youcef-Toumi K.; "Multi-actuation and PI control: a simple recipe for high-speed and large-range atomic force microscopy"; Ultramicroscopy 146 (2014) p.117-124 DOI: 10.1016/j.ultramic.2014.07.010
Suzuki Y., Endo M., Katsuda Y., Ou K., Hidaka K., Sugiyama H.; "DNA Origami Based Visualization System for Studying Site-Specific Recombination Events"; J. Am. Chem. Soc. 136 (2014) p.211-218
Suzuki Y., Endo M., Yang Y., Sugiyama H.; "Dynamic Assembly/Disassembly Processes of Photoresponsive DNA Origami Nanostructures Directly Visualized on a Lipid Membrane Surface"; J. Am. Chem. Soc. 136 (2014)p.1714-1717
Takenaka T., Endo M., Suzuki Y., Yang Y., Emura T., Hidaka K., Kato T., Miyata T., Namba K., Sugiyama H.; "Photoresponsive DNA nanocapsule having an open/close system for capture and release of nanomaterials"; Chemistry 20 (46) (2014) p.14951-14954 DOI: 10.1002/chem.201404757
Xiong Z., Mairiaux E., Walter B., Faucher M., Buchaillot L., Legrand B. ; "A Novel Dog-Bone Oscillating AFM Probe with Thermal Actuation and Piezoresistive Detection"; Sensors 14 11 (2014) p. 20667-20686 DOI:10.3390/s141120667
Yang Y., Endo M., Suzuki Y., Hidaka K., Sugiyama H.; "Direct Observation of the Dual-Switching Behaviours Corresponding to the State Transition in a DNA Nanoframe"; Chem. Comm. 50 (2014) p.4211-4213
Zhang K., Herrmann G., Edwards C., Burgess S., Miles M.; "A Non-raster Scanning Approach in Atomic Force Microscopy Using a Combined Contour Prediction Algorithm"; Proceedings of the 19th World Congress of the International Federation of Automatic Control Vol. 19 (2014) p.5908-5913

Papers 2013:

Ando T.; "High-speed atomic force microscopy of protein dynamics: myosin on actin and rotary enzyme F1-ATPase"; Microscopy & Analysis 27(3) (2013)
Ando T.; "Molecular Machines directly observed by high-speed atomic force microscopy"; FEBS Lett. 587 (2013) p.997-1007
Ando T., Uchihashi T., Kodera N.; "High-speed AFM and applications to biomolecular systems"; Annu. Rev. Biophys. 42 (2013) p393-414.
Ando T.; "High-speed atomic force microscopy"; Microscopy 62 (2013) p.81-93
Boekfah A., Devasia S.; "Output-Boundary Regulation: High-Speed AFM Imaging Application"; Proceedings of ASME 2013 Dynamic Systems and Control Conference (2013)
Brown B., Picco L., Miles M., Faul C.; "Opportunities in High-Speed Atomic Force Microscopy"; Small Journal DOI: 10.1002/smll.201203223
Chang P., Chavan D., Paris R., Iannuzzi D., Schitter G.; "Towards High Speed Ferrule-Top Atomic Force Microscopy"; Proceedings of the 6th IFAC Symposium on Mechatronic Systems (2013), p.131-137
Colom A., Casuso I., Rico F., Scheuring S.; "A hybrid high-speed atomic force-optical microscope for visualizing single membrane proteins on eukaryotic cells"; Nature communications 4 (2013)
Dhakal S., Mao H., Rajendran A., Endo M., Sugiyama H.; "G-quadruplex nanostructures probed at the single molecular level by force based methods"; Guanine Quartets: Structure and Application (Royal Society of Chemistry) (2013) p.73-85
Endo M., Yang Y., Sugiyama H.; "DNA origami technology for biomaterials applications"; Biomater. Sci. 1 (2013) p347-360
Endo M., Yamamoto S., Tatsumi K., Emura T., Hidaka K., Sugiyama H.; "RNA-templated DNA origami structures"; Chem. Comm. 49 (2013) p.2879-2881
Endo M., Inoue M., Suzuki Y., Masui C., Morinaga H., Hidaka K., Sugiyama H.; "Regulation of B-Z Conformational Transition and Complex Formation with a Z-form-binding Protein by Introduction of Constraint to Double-stranded DNA using DNA Nanoscaffold"; Chem. Eur. J. 19 (2013) p.16887-16890
Fukuda S., Uchihashi T., Iino R., Okazaki Y., Yoshida M., Igarashi K., Ando T.; "High-speed atomic force microscope combined with single-molecule fluorescence microscope"; Rev. Sci. Instrum. 84 (2013) p.073706
Hashimoto M., Kodera N., Tsunaka Y., Oda M., Tanimoto M., Ando T., Morikawa K., Tate S.; "Phosphorylation-coupled intramolecular dynamics of unstructured regions in chromatin remodeler FACT"; Biophys. J. 104 10 (2013) p.2222-2234
Itani T., Kozawa T.; "Resist Materials and Processes for Extreme Ultraviolet Lithography"; Jpn. J. Appl. Phys. 52 (2013) 010002 DOI:10.7567/JJAP.52.010002
Iwata F., Ohashi Y., Ishisaki I., Picco L., Ushiki T.; "Development of nanomanipulator using a high-speed atomic force microscope coupled with a haptic device"; Ultramicroscopy (2013) DOI: 10.1016/j.ultramic.2013.06.014
Kim B., Boehm R.; "Imaging Stability in Force-Feedback High-Speed Atomic Force Microscopy" Ultramicroscopy 125 (2013) p.29-34
Klapetek P., Picco L., Payton O., Yacoot A., Miles M.; "Error mapping of high-speed AFM systems"; Measurement Science and Technology 24 2 (2013) DOI: 10.1088/0957-0233/24/2/025006
Lee B., Somnath S., King W.; "Fast nanotopography imaging using a high speed cantilever with integrated heater-thermometer"; Nanotechnology 24 (2013)
Liu L, Scheuring S.; "Investigation of photosynthetic membrane structure using atomic force microscopy"; Trends Plant Sci. 18(5) (2013) p.277-86
Lyubchenko Y.; "AFM visualization of protein-DNA interactions"; Biophysics for the Life Sciences 2 (2013) p.97-117
Miyata K., Usho S., Yamada S., Furuya S., Yoshida K., Asakawa H., Fukuma T.; "Separate-type scanner and wideband high-voltage amplifier for atomic-resolution and high-speed atomic force microscopy"; Rev. Sci. Instrum. 84 (2013) p.043705
Miyata K., Asakawa H., Fukuma T.; " Real-time atomic-resolution imaging of crystal growth process in water by phase modulation atomic force microscopy at one frame per second "; Appl. Phys. Lett. 103 (2013) p.203104
Nia H., Soltani Bozchalooi I., Li Y., Grodzinsky A.; "High-Bandwidth AFM-Based Rheology Reveals that Cartilage is Most Sensitive to High Loading Rates at Early Stages of Impairment"; Biophysical Journal 104(7) (2013) p.1529-1537 DOI: 10.1016/j.bpj.2013.02.048
Noi K., Yamamoto D., Nishikori S., Arita-Morioka K., Ando T., Ogura T.; "High-Speed Atomic Force Microscopic Observation of ATP-Dependent Rotation of the AAA+ Chaperone p97"; Structure 2 (2013) p.1992-2002
Picas L., Rico F., Deforet M., Scheuring S.; "Structural and mechanical heterogeneity of the erythrocyte membrane reveals hallmarks of membrane stability"; ACS Nano 7 (2) (2013) p.1054-1063
Preiner J., Kodera N., Tang J., Ebner A., Brameshuber M., Blaas D., Ilk N., Gruber H., Ando T., Hinterdorfer P.; "Antibody Movement on Regular Antigen Clusters: Fab Arms are made for Walking"; Biophysical Journal 104 (2013) DOI:10.1016/j.bpj.2012.11.2122
Rajendran A., Endo M., Hidaka K., Sugiyama H.; "Direct and real-time observation of rotary movement of a DNA nanomechanical device"; J. Am. Chem. Soc. 135 (2013) p.1117-1123
Rajendran A., Endo M., Hidaka K., Sugiyama H.; "Control of the two-dimensional crystallization of DNA origami with various loop arrangements"; Chem. Comm. 49 (2013) p.686-688
Rajendran A., Endo M., Hidaka K., Tran P., Mergny J.-L., Sugiyama H.; "Controlling the stoichiometry and strand polarity of a tetramolecular G-quadruplex structure by using a DNA origami frame"; Nucleic Acids Research 41 (2013) p.8738-8747
Rajendran A., Endo M., Hidaka K., Tran P., Mergny J.-L., Gorelick R., Sugiyama H.; "HIV-1 Nucleocapsid Proteins as Molecular Chaperones for Tetramolecular Antiparallel G-Quadruplex Formation"; J. Am. Chem. Soc. 135 (2013) p.18575-18585
Rana M., Pota H., Petersen I.; "High-Speed AFM Image Scanning Using Observer-Based MPC-Notch Control"; IEEE Transactions on Nanotechnology 12 2 (2013) p.246-254
Rico F., González L., Casuso I., Puig-Vidal M., Scheuring S.; "High-Speed AFM Force Spectroscopy Unfolds Titin at the Speed of Molecular Dynamics Simulations"; Science 342 (6159) (2013) p.741-743
Santillan J., Itani T.; "Dissolution Characteristics of EUV Resist by High Speed AFM"; J. Photopoly. Sci. Technol. 25 1 (2013) p.95-100
Santillan J., Itani T.; "In situ dissolution analysis of half-pitch line and space patterns at various resist platforms using high-speed atomic force microscopy"; Proc. SPIE 8682 (2013) 86820I
Santillan J., Itani T.; "In situ analysis of the EUV resist pattern formation during the resist dissolution process"; J. Photopoly. Sci. Technol. 26 5 (2013) p.611-616
Scheuring S., Casuso I., Rico F., Colom A.; "High-Speed Atomic Force Microscopy of Protein-Protein Interactions"; Biophysical Journal 104 2 (2013) p.386
Shiobara E., Kikuchi Y., Itani T.; "Study of LWR reduction and pattern collapse suppression for 16nm node EUV resists"; Proc. SPIE 8679 (2013) 86792B
Shlyakhtenko L., Lushnikov A., Miyagi A., Li M., Harris R., Lyubchenko Y.; "Atomic force microscopy studies of APOBEC3G oligomerization and dynamics"; J. Struct Biol. 184(2) (2013) p.217-25
Suzuki Y., Goetze T., Stroebel D., Balasuriya D., Yoshimura S., Henderson R., Paoletti P., Takeyasu K., Edwardson J.; "Visualization of Structural Changes Accompanying Activation of N-Methyl-D-aspartate (NMDA) Receptors Using Fast-scan Atomic Force Microscopy Imaging"; J. Biol. Chem. 288 (2013) p.778-784
Suzuki Y., Sakai N., Yoshida A., Uekusa Y., Yagi A., Imaoka Y., Ito S., Karaki K., Takeyasu K.; "High-speed atomic force microscopy combined with inverted optical microscopy for studying cellular events"; Sci. Rep. 3 (2013) p.2131 DOI:10.1038/srep02131
Tuma T., Haeberle W., Rothuizen H., Lygeros J., Pantazi A., Sebastian A.; "Dual-stage nanopositioning for high-speed scanning probe microscopy"; IEEE/ASME Transactions on Mechatronics 99 (2013) p.1-11
Uchihashi T., Kodera N., Ando T.; "Nanovisualization of proteins in action using high-speed AFM"; Biophysics for the Life Sciences 2 (2013) p.119-147
Vermeer R., Sarajlic E., Siekman M., Kawakatsu H., Fujita H., Tas N., Jansen H.; "Electrostatically actuated double cantilever AFM probe for high speed imaging"; Proceedings of the Transducers & Eurosensors XXVII (2013) p. 912 - 915
Watanabe H., Uchihashi T., Kobashi T., Shibata M., Nishiyama J., Yasuda R., Ando T.; "Wide-area scanner for high-speed atomic force microscopy"; Rev. Sci. Instrum. 84 (2013) p.053702
Yamashita H., Inoue K., Shibata M., Uchihashi T., Sasaki J., Kandori H., Ando T.; "Role of trimer-trimer interaction of bacteriorhodopsin studied by optical spectroscopy and high-speed atomic force microscopy"; J. Struct. Biol. (2013) p.2-11
Yilmaz N., Yamada T., Greimel P., Uchihashi T., Ando T., Kobayashi T.; "Real-Time Visualization of Assembling of a Sphingomyelin-Specific Toxin"; Biophys. J. 105 (2013) p.1397-1405
Zhao J., Cai W., Shang G., Yao J.; "Oscillatory Motions of a Cantilever in High-Speed Atomic Force Microscopy in Constant-Height Mode"; Appl. Phys. Express 6 (2013)

Papers 2012:

Ando T.; "High-speed atomic force microscopy coming of age"; Nanotechnology 23 (2012) p.062001
Ando T., Kodera N.; "Visualization of mobility by atomic force microscopy", Methods Mol. Biol. 896 (2012) p.57-69
Ando T., Uchihashi T., Kodera N.; "High-speed atomic force microscopy", Jpn. J.
Appl. Phys. 51 (2012)
Brown K., Yang B., Westervelt R.; "Self-driving capacitive cantilevers for high-frequency atomic force microscopy"; Appl. Phys. Lett. 100 053110 (2012) DOI: http://dx.doi.org/10.1063/1.3679684
Burns D., Fantner G., Youcef-Toumi K.; "Automatic lateral resonance identification from cantilever deflection information in high speed atomic force microscopy"; Proceedings of the American Control Conference (2012) DOI: 10.1109/ACC.2012.6315085
Casuso I., Khao J., Chami M., Paul-Gilloteaux P., Husain M., Duneau J.P., Stahlberg H., Sturgis J.N., Scheuring S.; "Characterization of the motion of membrane proteins using high-speed atomic force microscopy"; Nat Nanotechnol. (2012) p.525-529 DOI: 10.1038/nnano.2012.109
Colom A., Casuso I., Boudier T., Scheuring S.; "High-Speed Atomic Force Microscopy: Cooperative Adhesion and Dynamic Equilibrium of Junctional Microdomain Membrane Proteins"; J Mol Biol. (2012) p.249-256
Colom A., Casuso I., Boudier T., Rico F., Scheuring S.; "Direct Observation of Junctional Microdomain Assembly "; Biophysical Journal 102 3 (2012) p.297
Das S., Pota H., Petersen I.; "Resonant Controller for Fast Atomic Force Microscopy"; 51st IEEE Conference on Decision and Control, December 10-13, 2012. Maui, Hawaii, USA
Endo M., Miyazaki R., Emura T., Hidaka K., Sugiyama H.; " Transcription regulation system mediated by mechanical operation of a DNA nanostructure"; J Am Chem Soc. 134(6) (2012) p.2852-2855
Endo M., Tatsumi K., Terushima K., Katsuda Y., Hidaka K., Harada Y., Sugiyama H.; "Direct Visualization of the Movement of a Single T7 RNA Polymerase and Transcription on a DNA Nanostructure"; Angew. Chem. Int. Ed. 51 (2012) p.8778-8782
Endo M., Yang Y., Suzuki Y., Hidaka K., Sugiyama H.; "Single-molecule visualization of the hybridization and dissociation of photoresponsive oligonucleotides and their reversible switching behavior in a DNA nanostructure"; Angew Chem Int Ed Engl. 5 (2012) p.10518-10522
Erickson B., Coquoz S., Adams J., Burns D., Fantner G.; "Large-scale analysis of high-speed atomic force microscopy data sets using adaptive image processing"; Beilstein Journal of Nanotechnology ISSN 2190-4286 vol. 3 (2012) p.747-758
Ewald M., Shibata M., Uchihashi T., Kandori H., Ando T.; "3F1058 Obervation of Transmembrane Protein by High Speed Atomic Force Microscopy: Bacteriorhodopsin D85S Mutant, a Chloride Pump"; Seibutsu Butsuri Vol. 52 (2012) DOI: 10.2142/biophys.52.S67_3
Fukuma T., Onishi K., Kobayashi N., Matsuki A., Asakawa H.; "Atomic-resolution imaging in liquid by frequency modulation atomic force microscopy using small cantilevers with megahertz-order resonance frequencies"; Nanotechnology 23 (2012) p.135706
Harniman R., Vicary J., Hörber J., Picco L., Miles M., Antognozzi M.; "Methods for imaging DNA in liquid with lateral molecular-force microscopy"; Nanotechnology vol 23 (2012)
Hu S., Mininni L., Hu Y., Erina N., Kindt J., Su C.; "High-speed atomic force microscopy and peak force tapping control"; Proceedings of the SPIE V.8324 (2012)
Huang P., Andersson S.; " Fast detection based on semi-transient signals in AFM"; American Control Conference (2012) p. 3216-3221
Husain M., Boudier T., Paul-Gilloteaux P., Casuso I., Scheuring S.; "Software for drift compensation, particle tracking and particle analysis of high-speed atomic force microscopy image series"; J Mol Recognit. (2012) p.292-298 DOI: 10.1002/jmr.2187
Igarashi K., Uchihashi T., Koivula A., Wada M., Kimura S., Penttilä M., Ando T., Samejima M.; "Visualization of cellobiohydrolase I from Trichoderma reesei moving on crystalline cellulose using high-speed atomic force microscopy", Methods Enzymol. 510 (2012) p.169-182
Iijima M., Somiya M., Yoshimoto N., Niimi T., Kuroda S.; "Nano-visualization of oriented-immobilized IgGs on immunosensors by high-speed atomic force microscopy"; Scientific Reports 2 790 (2012) p.1-5
Kenton B., Leang K.; "Design and Control of a Three-Axis Serial-Kinematic High-Bandwidth Nanopositioner"; IEEE/ASME Transactions on Mechatronics 17 (2012) p.356-369
Kim B., Boehm R.; "Force-Feedback High-Speed Atomic Force Microscope for Studying Large Biological Systems"; Micron 43.12 (2012) p.1372-1379
Lee D., Lee H., Lee N. S., Kim K. B., Seo Y.; "High-speed atomic force microscopy with phase-detection"; Applied Physics 12 (2012) p.989-994
Leitner M., Fantner G., Fantner E., Ivanova K., Ivanov T., Rangelow I., Ebner A., Rangl M., Tang J., Hinterdorfer P.; "Increased imaging speed and force sensitivity for bio-applications with small
cantilevers using a conventional AFM setup"; Micron 43 (2012) p.1399-1407
Leung C., Bestembayeva A., Thorogate R., Stinson J., Pyne A., Marcovich Ch., Yang J., Drechsler U., Despont M., Jankowski T., Tschöpe M., Hoogenboom B.; "Atomic Force Microscopy with Nanoscale Cantilevers Resolves Different Structural Conformations of the DNA Double Helix"; NanoLetters (2012) DOI: 10.1021/nl301857p
Mahut M., Leitner M., Ebner A., Lämmerhofer M., Hinterdorfer P., Lindner W.; "Time-resolved chloroquine-induced relaxation of supercoiled plasmid DNA"; Anal Bioanal Chem. 402 2012) p.373-380
Mohri K., Nishikawa M., Takahashi N., Shiomi T., Matsuoka N., Ogawa K., Endo M., Hidaka K., Sugiyama H., Takahashi Y., Takakura Y.; "Design and development of nano-sized DNA assemblies in polypod-like structures as efficient vehicles for immunostimulatory CpG motifs to immune cells"; ACS Nano 6 7 (2012) p.5931-5940
Mori T., Hirose A., Hagiwara T., Ohtsuka M., Kakuta Y., Kimata K., Okahata Y.; "Single-molecular enzymatic elongation of hyaluronan polymers visualized by high-speed atomic force microscopy"; J. Am. Chem. Soc. 134 50 (2012) p.20254-20257
Nakata E., Fong L., Uwatoko C., Kiyonaka S., Mori Y., Katsuda Y., Endo M., Sugiyama H., Morii T.; "Zinc finger proteins as adaptor for locating proteins at specific addresses of DNA origami structures"; Angew Chem. Int. Ed. 51 (2012) p.2421-2424
Nia H., Soltani Bozchalooi I., Li Y., Frank E., Youcef-Toumi K., Grodzinsky A., Ortiz C.; "The Effect of GAG Depletion on Cartilage Nanoscale Hydraulic Permeability"; Transactions of the 58th Annual Orthopaedic Research Society San Francisco (2012)
Nojima T., Konno H., Kodera N., Seio K., Taguchi H., Yoshida M.; "Nano-scale alignment of proteins on a flexible DNA backbone"; PLoS One 7 12 (2012) e52534
Payton O., Picco L., Miles M., Homer M., Champneys A.; "Modelling oscillatory flexure modes of an atomic force microscope cantilever in contact mode whilst imaging at high speed"; Nanotechnology 23 (2012) p.265702 DOI: 10.1088/0957-4484/23/26/265702
Payton O., Picco L., Miles M., Homer M., Champneys A.; "Improving the signal-to-noise ratio of high-speed contact mode atomic force microscopy"; Review of Scientific Instruments vol 83 (2012) DOI: 10.1063/1.4747455
Payton O., Picco L., Robert D., Raman A., Homer M., Champneys A., Miles M.; "High-speed atomic force microscopy in slow motion - understanding cantilever behaviour at high scan velocities"; Nanotechnology 23 (2012) p.205704 DOI: 10.1088/0957-4484/23/20/205704
Pleskova S., Aybeke E., Pudovkina E., Bourillot E., Lesniewska E.; "The study of monocytes and their submembrane structures by atomic force microscopy"; J. of Bio. Phys. and Chem. 12 4 (2012) p.168-173
Rajendran A., Endo M., Sugiyama H.; "Single-molecule analysis using DNA origami"; Angew. Chem. Int. 51 (2012) p.874-890
Rajendran A., Endo M., Sugiyama H.; "Structural and fuctional analysis of proteins by high-speed atomic force microscopy"; Adv. Protein Chem. Struct. Biol. 87 (2012) p.5-55
Rajendran A., Endo M., Sugiyama H.; "DNA origami: synthesis and self-assembly"; Curr. Protoc. Nucleic Acid Chem. 48 (2012) p.12.9.1-12.9.18
Santillan J., Itani T.; "An in situ analysis of the resist pattern formation process"; Proc. SPIE 8325 (2012) 83250P
Shlyakhtenko L., Lushnikov A., Miyagi A., Li M., Harris R., Lyubchenko Y.; "Nanoscale structure and dynamics of ABOBEC3G complexes with single-stranded DNA"; Biochemistry 51 32 (2012) p.6432-6440
Soltani Bozchalooi I., Youcef-Toumi K., Burns D., Fantner G.; "A vibration suppression approach to high-speed atomic force microscopy"; Proceedings of the American Control Conference (2012) DOI: 10.1109/ACC.2012.6315281
Suzuki Y., Shin M., Yoshida A., Yoshimura S., Takeyasu K.; "Fast microscopical dissection of action scenes played by Escherichia coli RNA polymerase"; FEBS Letters 586 (2012) p.3187-3192
Tuma T., Lygeros J., Kartik V., Sebastian A., Pantazi A.; "High-speed multiresolution scanning probe microscopy based on Lissajous scan trajectories"; Nanotechnology 23 (2012) p.185501
Uchihashi T., Kodera N., Ando T.; "Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy", Nature Protocols 7 (6) (2012) p.1193-1206
Watanabe H., Shibata M., Uchihashi T., Yasuda R., Ando T.; "3PS016 Development of "hopping-mode" high speed atomic force microscopy (AFM)"; Seibutsu Butsuri Vol. 52 (2012) DOI: 10.2142/biophys.52.S148_4
Wickham S., Bath J., Katsuda Y., Endo M., Hidaka K., Sugiyama H., Tuberfield A.; "DNA-based molecular motor that can navigate a network of tracks"; Nature Nanotechnol. 7 (2012) p.169-173
Yamashita H., Taoka A., Uchihashi T., Asano T., Ando T., Fukumori Y.; "Single molecule imaging on living bacterial cell surface by high-speed AFM"; J. Mol. Biol. 422 (2012) p.300-309
Yang Y, Endo M., Hidaka K., Sugiyama H.; "Photo-controllable DNA origami nanostructures assembling into predesigned multiorientational patterns"; J. Am. Chem. Soc. 134 51 (2012) p.20645-20653
Yong Y., Moheimani S.; "A Z-scanner design for high-speed scanning probe microscopy"; Proceedings of IEEE International Conference on Robotics and Automation (2012) p. 4780-4785
Yoshidome T., Endo M., Kashiwazaki G., Hidaka K., Bando T., Sugiyama H.; "Sequence-selective single molecule alkylation with a pyrrole-imidazole polyamide visualized in a DNA nanoscaffold"; J. Am. Chem. Soc. 134 (2012) p.4654-4660

Papers 2011:

Burns D., Youcef-Toumi K., Fantner G.; "Indirect Identification and Compensation of Lateral Scanner Resonances in Atomic Force Microscopes" Nanotechnology 22 31 (2011)
Casuso I., Rico F., Scheuring S.; "High-speed atomic force microscopy: Structure and dynamics of single proteins"; Curr Opin Chem Biol. (2011) p.704-709
Casuso I., Rico F., Scheuring S.; " Biological AFM: where we come from--where we are--where we may go"; J. Mol. Recognit. 24 3 (2011) p.406-413
Chang P., Huang P., Maeng J., Andersson S.; "Local raster scanning for high-speed imaging of biopolymers in atomic force microscopy"; Rev. Sci. Instrum. 82 (2011) p.063703
Enning R., Ziegler D., Nievergelt A., Friedlos R, Venkataramani K., Stemmer A.; "A high frequency sensor for optical beam deflection atomic force microscopy"; Review of Scientific Instruments 82 (2011) p.043705
Endo M., Sugita T., Rajendran A., Katsuda Y., Emura T., Hidaka K., Sugiyama H.; "Two-dimensional DNA origami assemblies using four-way connector"; Chem. Commun. 47 (2011) p.3213
Endo M., Hidaka K., Sugiyama H.; "Direct AFM observation of an opening event of a DNA cuboid constructed via a prism structure"; Org. Biomol. Chem. 9 (2011) p.2075
Fleming A.; "Dual-Stage Vertical Feedback for High-Speed Scanning Probe Microscopy"; IEEE Transactions on Control Systems Technology Vol. 19 (2011)
Fukuma T., Yoshioka S., Asakawa H.; "Wideband phase-locked loop circuit with real-time phase correction for frequency modulation atomic force microscopy"; Review of Scientific Instruments 82 073707 (2011) DOI: http://dx.doi.org/10.1063/1.3608447
Humphris A., Zhao B., Catto D., Howard-Knight J., Kohli P., Hobbs J.; "High speed nano-metrology"; Review of Scientific Instruments 82 (2011) p.043710
Igarashi K., Uchihashi T., Koivula A., Wada M., Kimura S., Okamoto T., Penttilä M., Ando T., Samejima M.; "Traffic Jams Reduce Hydrolytic Efficiency of Cellulase on Cellulose Surface"; Science 333 (2011) p.1279-1282
Inoue S., Uchihashi T., Yamamoto D., Ando T.; "Direct Observation of Surfactant Aggregate Behavior on a Mica Surface using High-Speed Atomic Force Microscopy"; Chemical Communications 47 (2011) p.4974-4976
Katan A., Dekker C.; "High-Speed AFM Reveals the Dynamics of Single Biomolecules at the Nanometer Scale";Cell 147 (2011) p.979-982
Kitazawa M., Ito S., Yagi A., Sakai N., Uekusa Y., Ohta R., Inaba K., Hayashi A.,
Hayashi Y., Tanemura M.; "High-Resolution Imaging of Plasmid DNA in Liquids
in Dynamic Mode Atomic Force Microscopy Using a Carbon Nanofiber Tip";
Japanese Journal of Applied Physics 50 (2011)
Kenton B., Fleming A., Leang K.; "A compact ultra-fast vertical nanopositioner for improving scanning probe microscope scan speed"; Review of Scientific Instruments 82 (2011) p.123703
Laisne A., Ewald M., Ando T., Lesniewska E., Pompon D.; "Self-assembly properties and dynamic of synthetic proteo-nucleic building blocks in solution and on surfaces"; Bioconjugate Chem. 22 (2011) p.1824-1834
Lyubchenko Y., Shlyakhtenko L., Ando T.; "Imaging of nucleic acids with atomic force microscopy", Methods 54 (2011) p.274-283
Miyagi A., Ando T., Lyubchenko Y. L.; "Dynamics of nucleosomes assessed with time-lapse high speed atomic force microscopy"; Biochemistry 50 (2011) p.7901-790
Rajendran A., Endo M., Katsuda Y., Hidaka K., Sugiyama H.; "Programmed two-dimensional self-assembly of multiple DNA origami jigsaw pieces"; ACS Nano 5 1 (2011) p.665-671
Rajendran A., Endo M., Katsuda Y., Hidaka K., Sugiyama H.; "Photo-cross-linking-assisted thermal stability of DNA origami structures and its application for higher-temperature self-assembly"; J. Am. Chem. Soc. 133 37 (2011) p.14488-14491
Richter C., Burri M., Sulzbach T., Penzkofer C., Irmer B.; "Ultrashort cantilever probes for high speed atomic force microscopy", SPIE Newsroom (2011)
Rutten P.; "High speed two-dimensional optical beam position detector"; Review of Scientific Instruments 82 (2011) p.073705
Sanchez H., Suzuki Y., Yokokawa M., Takeyasu K., Wyman C.;"Protein-DNA interactions in high speed AFM: single molecule diffusion analysis of human RAD54"; Integrative Biology 3 (2011) p.1127-1134
Shibata M., Uchihashi T., Yamashita H., Kandori H., Ando T.; "Structural changes in bacteriorhodopsin in response to alternate illumination observed by high-speed atomic force microscopy"; Angewande Chemie International edition 50 (2011) p.4410-4413
Soltani Bozchalooi I., Youcef-Toumi K., Burns D., Fantner G.; "Compensator design for improved counterbalancing in high speed atomic force microscopy"; Review of Scientific Instruments ISSN 0034-6748 vol. 82 num. 11 (2011) p.113712
Suzuki A., Hori T., Nishino T., Usukura J., Miyagi A., Morikawa K., Fukagawa T.; " Spindle microtubules generate tension-dependent changes in the distribution of inner kinetochore proteins"; J. Cell Biol. 193 (2011) p.125-140
Suzuki Y., Yoshikawa Y., Yoshimura S., Yoshikawa K., Takeyasu K.; "Unraveling DNA dynamics using atomic force microscopy"; Wiley Interdiscip. Rev. Nanomed. Nanobiotechnol. 3 6 (2011) p.574-588
Suzuki Y., Gilmore J., Yoshimura S., Henderson R., Lyubchenko Y., Takeyasu K.; "Visual Analysis of Concerted Cleavage by Type IIF Restriction Enzyme SfiI in Subsecond Time Region"; Biophys. J. 101 (2011) p.2992-2998
Uchihashi T., Ando T., "High-speed atomic force microscopy and biomolecular processes"; Methods Mol. Biol. 736 (2011) p.285-300
Uchihashi T., Iino R., Ando T., Noji H.; "High-speed atomic force microscopy reveals rotary catalysis of rotorless F1-ATPase"; Science 333 (2011) p.755-758
Wickham S., Endo M., Katsuda Y., Hidaka K., Bath J., Sugiyama H., Turberfield A.; "Direct observation of stepwise movement of a synthetic molecular transporter"; Nature Nanotechnol. 6 (2011) p.166-169
Yamamoto S.-I., Okada T., Uraoka Y., Yamashita I., Hasegawa S.; "Static and dynamic observation of supermolecular protein, ferritin, using high-speed atomic force microscope"; J. Appl. Phys. 109 (2011) p.034901
Yokokawa M., Takeyasu K.; "Motion of the Ca2+-pump captured"; FEBS J. 278 (2011) p.3025-3031
Zhang Y., Fang Y., Yu J., Dong X.; "Note: A Novel Atomic Force Microscope Fast Scanning Approach: Variable Speed Scanning"; Review of Scientific Instrument 82 (2011) p.056103

Papers 2010:

Braunsmann Ch., Schäffer T.E.; "High-speed atomic force microscopy for large scan sizes using small cantilevers"; Nanotechnology 21 (2010) p.225705
Casuso I., Sens P., Rico F., Scheuring S.; "Experimental Evidence for Membrane-Mediated Protein-Protein Interaction"; Biophys. J. 99 (2010) L47-L49
Degertekin F., Torun H.; "Comment on "MEMS-based high speed scanning probe microscopy" [Rev. Sci. Instrum. 81, 043702 (2010)]", Rev. Sci. Instrum. 81 (2010)
Disseldorp E., Tabak F., Katan A., Hesselberth M., Oosterkamp T., Frenken J., van Spengen W.; " MEMS-based high speed scanning probe microscopy"; Rev. Sci. Instrum. 81 (2010) p.043702
Endo M., Katsuda Y., Hidaka K., Sugiyama H.; "A Versatile DNA Nanochip for Direct Analysis of DNA Base-Excision Repair"; Angew. Chem. Int. Ed. 49 (2010) p.9412-9416
Endo M., Katsuda Y., Hidaka K., Sugiyama H.; "Regulation of DNA Methylation Using Different Tensions of Double Strands Constructed in a Defined DNA Nanostructure"; J. Am. Chem. Soc. 132 (2010) p.1592-1597
Endo M., Sugita T., Katsuda Y., Hidaka K., Sugiyam H.; "Inside Cover: Programmed-Assembly System Using DNA Jigsaw Pieces"; Chem. Eur. J. 16 (2010) p.5362-5368
Fantner G.E., Barbero R.J., Gray D.S., Belcher A.M.; "Kinetics of antimicrobial peptide activity measured on individual bacterial cells using high-speed atomic force microscopy"; Nature Nanotechnology 5 (2010) p.280-285
Fleming A., Kenton B., Leang K.; "Bridging the gap between conventional and video-speed scanning probe microscopes"; Ultramicroscopy 110 (2010) p.1205-1214
Giocondi M.-C., Yamamoto D., Lesniewska E., Milhiet P.-E., Ando T., Le Grimellec C.; "Surface topography of membrane domains"; Biochim. Biophys. Acta.-Biomembranes 1798 (2010) p.703-718
Hinterdorfer P.; "High Speed Bio-AFM Reveals Motion of Membrane Proteins Driven by Hydrophobic Mismatch with nm Precision in Label-Free Fashion"; Biophys J. 99(7) (2010) p.2017
Itani T., Santillan J.; "Dissolution Behavior of Photoresists: An In-situ Analysis"; J. Photopolym. Sci. Technol. 23 (2010) p.639
Itani T. Santillan J.; "In situ Characterization of Photoresist Dissolution"; Appl. Phys. Express 3 (2010) p.061601
Kasai N., Ramanujan C., Fujimoto I., Shimada A., Ryan J., Torimitsu K.; "AFM observation of single, functioning ionotropic glutamate receptors reconstituted in lipid bilayers"; Biochimica et Biophysica Acta 1800 (2010) p.655-661
Kodera N., Yamamoto D., Ishikawa R., Ando T.; "Video imaging of walking myosin V by high-speed atomic force microscopy"; Nature 468 (2010) p.72-76
Li Y. J., Takahashi K., Kobayashi N., Naitoh Y., Kageshima M., Sugawara Y.; "Multifrequency High-Speed Phase-Modulation Atomic Force Microscopy"; Ultramicroscopy Vol.110 (2010) p.582
Milhiet P.-E., Yamamoto D., Berthoumieu O., Dosset P., Le Grimellec C., Verdier J.-M., Marchal S., Ando T.; "Deciphering the structure, growth and assembly of amyloid-like fibrils using high-speed atomic force microscopy"; PLos One 5 (2010) e1324
Rajendran A., Endo M., Katsuda Y., Hidaka K., Sugiyama H.; "Programmed Two-Dimensional Self-Assembly of Multiple DNA Origami Jigsaw Pieces"; ACS Nano 5 (2010) p.665-671
Salem F.; "Ultra-High Speed Atomic Force Microscopy: video-rate and beyond"; ISCAS IEEE (2010) p.1197-1200
Sannohe Y., Endo M., Katsuda Y., Hidaka K., Sugiyama H.; "Visualization of Dynamic Conformational Switching of the G-Quadruplex in a DNA Nanostructure"; J. Am. Chem. Soc. 132 (2010) p.16311-16313
Shibata M., Yamashita H., Uchihashi T., Kandori H., Ando T.; "High-speed atomic force microscopy shows dynamic molecular processes in photo-activated bacteriorhodopsin"; Nature Nanotechnology 5 (2010) p.208-212
Shinohara K., Kodera N.,Oohashi T.; "Single-Molecule Imaging of Photodegradation Reaction in a Chiral Helical π-Conjugated Polymer Chain"; Polymer Chemistry 48 (2010) p.4103-4107
Shinozaki Y., Sumitomo K., Furukawa K., Miyashita H., Tamba Y., Kasai N., Nakashima H., Torimitsu K.; "Visualization of Single Membrane Protein Structure in Stretched Lipid Bilayer Suspended over Nanowells"; Appl. Phys. Express 3 (2010) p.027002
Sugimoto S., Yamanaka K., Nishikori S., Miyagi A., Ando T., Ogura T.; "AAA+ chaperone ClpX regurates dynamics of prokaryotic cytoskeletal protein FtsZ"; J. Biol. Chem. 285 (2010) p.6648-6657
Suzuki Y., Higuchi Y., Hizume K., Yokokawa M., Yoshimura S., Yoshikawa K., Takeyasu K.; "Molecular dynamics of DNA and nucleosomes in solution studied by fast-scanning atomic force microscopy"; Ultramicroscopy 110 (2010) p.682-688
Tabak F., Disseldorp E., Wortel G., Katan A., Hesselberth M., Oosterkamp T., Frenken J., van Spengen W.; "MEMS-based fast scanning probe microscopes"; Ultramicroscopy 110 (2010) p.599-604
Tanaka F., Mochizuki T., Liang X., Asanuma H., Tanaka S., Suzuki K., Kitamura S., Nishikawa A., Ui-Tei K., Hagiya M.; "Robust and Photocontrollable DNA Capsules Using Azobenzenes"; Nano Lett. 10 (2010) p.3560-3565
Yamamoto D., Taoka A., Uchihashi T., Sasaki H., Watanabe H., Ando T., Fukumori Y.; "Visualization and structural analysis of the bacterial magnetic organelle magnetosome using atomic force microscopy"; Proc. Natl. Acad. Sci. USA 107 (2010) p.9382-9387
Yamamoto D., Uchihashi T., Kodera N., Yamashita H., Nishikori S., Ogura T., Shibata M., Ando T.; "High-speed atomic force microscopy techniques for observing dynamic biomolecular processes"; Methods Enzymol. 475 (2010) p.541-564
Yokokawa M., Carnally S., Henderson R., Takeyasu K., Edwardson J.; "Acid-sensing ion channel (ASIC) 1a undergoes a height transition in response to acidification"; FEBS Lett. 584 (2010) p.3107-3110

Papers 2009:

Casuso I., Kodera N., Le Grimellec C., Ando T., Scheuring S.; "Contact mode high-resolution high-speed atomic force microscopy movies of purple membrane"; Biophys Journal 97 (2009) p.1354-1361
Carberry D., Picco L., Dunton P., Miles M.; "Mapping real-time images of High-Speed AFM using multitouch control"; Nanotechnology 20 (2009) p.434018 DOI: 10.1088/0957-4484/20/43/434018
Clayton G., Tien S., Leang K., Zou Q., Devasia S.; "A Review of Feedforward Control Approaches in Nanopositioning for High-Speed SPM"; Journal of Dynamic Systems, Measurement and Control Vol. 131 (2009) 061101-1-19
Endo M., Hidaka K., Kato T., Namba K., Sugiyama H.; "DNA Prism Structures Constructed by Folding of Multiple Rectangular Arms"; J. Am. Chem. Soc. 131 (2009) p.15570-15571
Endo M., Sugiyama H.; "Chemical Approaches to DNA Nanotechnology"; ChemBioChem 10 (2009) p.2420
Endo M., Sugiyama H.; "Three-dimensional DNA nanostructures constructed by folding of multiple rectangles"; Nucleic Acids Symp. Ser. 53 (2009) p.81
Fantner G., Burns D., Belcher A., Rangelow I., Youcef-Toumi K.; "DMCMN: In Depth Characterization and Control of AFM Cantilevers With Integrated Sensing and Actuation"; Journal of Dynamic Systems Measurement and Control-Transactions of the Asme 131 6 (2009)
Gilmore J., Suzuki Y., Tamulaitis G., Siksnys V., Takeyasu K., Lyubchenko Y.; "Single-Molecule Dynamics of the DNA−EcoRII Protein Complexes Revealed with High-Speed Atomic Force Microscopy"; Biochemistry 48 (2009) p.10492-10498
Igarashi K., Koivula A., Wada M., Kimura S., Penttilä M., Samejima M.; "High Speed Atomic Force Microscopy Visualizes Processive Movement of Trichoderma reesei Cellobiohydrolase I on Crystalline Cellulose"; The Journal of Biological Chemistry 284 (2009) p.36186-36190
Leang K., Fleming A.; "High-Speed Serial-Kinematic SPM Scanner: Design and Drive Considerations"; Asian Journal of Control 11 (2009) p.144-153
Lyubchenko Y., Shlyakhtenko L., Gall A.; "Atomic force microscopy imaging and probing of DNA, proteins, and protein DNA complexes: silatrane surface chemistry"; Methods Mol Biol. 543 (2009) p.337-351
Lyubchenko Y., Shlyakhtenko L.; "AFM for analysis of structure and dynamics of DNA and protein-DNA complexes"; Methods Mol Biol. 47 (2009) p.206-213
Mitani Y., Kubo M., Muramoto K., Fukuma T.; "Wideband digital frequency detector with subtraction-based phase comparator for frequency modulation atomic force microscopy"; Review of Scientific Instruments 80 083705 (2009) DOI: http://dx.doi.org/10.1063/1.3212670
Picco L., Engledew D., Vicary J., Antognozzi M., Ulcinas A., Dunton P., Miles M.; "High-speed atomic force microscopy for imaging and generating nanostructures"; 9th IEEE Conference on Nanotechnology (2009)
Pyne A., Marks W., Picco L., Dunton P., Ulcinas A., Barbour M., Jones S., Gimzewski J., Miles M.; "High-Speed Atomic Force Microscopy of dental enamel dissolution in citric acid"; Archives of Histology and Cytology Vol 72 (2009) p.209-215 DOI: 10.1679/aohc.72.209
Shinohara K., Kodera N., Ando T.; "Single-molecule imaging of a micro-Brownian motion of a chiral helical π-conjugated polymer as a molecular spring driven by thermal fluctuations"; Chem Lett. 38 (2009) p.690-691
Shinozaki Y., Sumitomo K., Tsuda M., Koizumu S., Inoue K., Torimitsu K.; "Direct Observation of ATP-Induced Conformational Changes in Single P2X4 Receptors"; PLoS Biol. 7 (2009) e1000103
Shlyakhtenko L., Lushnikov A., Lyubchenko Y.; "Dynamics of Nucleosomes Revealed by Time-Lapse Atomic Force Microscopy"; Biochemistry 48 (2009) p.7842-7848
Vicary J.A., Miles M.J.; "Real-time nanofabrication with high-speed atomic force microscopy"; Nanotechnology 20 (2009) p.095302
Yamamoto D., Nagura N., Omote S., Taniguchi M., Ando T.; "Streptavidin 2D crystal substrates for visualizing biomolecular processes by atomic force microscopy"; Biophys. J. 97 (2009) p.2358-2367
Yamashita H., Voïtchovsky K., Uchihashi T., Antoranz Contera S., Ryan J. F., Ando T.; "Dynamics of bacteriorhodopsin 2D crystal observed by high-speed atomic force microscopy"; J. Struct. Biol. 167 (2009) p.153-158
Zhao B., Howard-Knight J.P., Humphris A.D.L., Kailas L., Ratcliffe E.C., Foster S.J., Hobbs J.K.; "Large scan area high-speed atomic force microscopy using a resonant scanner"; Rev. Sci. Instrum. 80 (2009) p.093707

Papers 2008:

Ando T.; "Control techniques in high-speed atomic force microscopy"; Proceedings of the American Control Conference art. no. 4586984 (2008) p.3194-3200
Ando T., Uchihashi T., Fukuma T.; "High-speed atomic force microscopy for nano-visualization of dynamic biomolecular processes"; Prog. Surf. Sci. (2008) p.337-437
Ando T., Uchihashi T., Kodera N., Yamamoto D., Miyagi A., Taniguchi M., Yamashita H.; "High-speed AFM and nano-visualization"; Eur J Physiol 456 (2008) p.211-225
Ando T.; "Observation of the protein molecule by HS-AFM"; Applied Physics 77 (2008) p.1181
Antognozzi M., Ulcinas A., Picco L., Simpson S., Heard P., Szczelkun M., Brenner B., Miles M.; "A new detection system for extremely small vertically mounted cantilevers"; Nanotechnology Vol. 19 (38) (2008) p.384002
Fukuma T., Okazaki Y., Kodera N., Uchihashi T., Ando T.; "High resonance frequency force microscope scanner using inertia balance support"; Appl. Phys. 92 (2008) p.243119
Hoogenboom B.W., Frederix P.L.T.M., Fotiadis D., Hug H.J., Engel A.; "Potential of interferometric cantilever detection and its application for SFM/AFM in liquids"; Nanotechnology 19/38 (2008)
Li Y. J., Kobayashi N., Nomura H., Naitoh Y., Kageshima M., Sugawara Y.; "High-speed Phase-Modulation Atomic Force Microscopy (PM-AFM) in Constant-Amplitude (CA) Mode Capable of Simultaneous Measurement of Topography and Energy Dissipation"; Jpn. J. Appl. Phys. vol. 47 No. 7B (2008) p.6121-6124
Miyagi A., Tsunaka Y., Uchihashi T., Mayanagi K., Hirose S., Morikawa K., Ando T.; "Visualization of intrinsically disordered regions of proteins by high-speed atomic force microscopy"; Chem. Phys. Chem. 9 (2008) p.1859-1866
Picco, L.M., Dunton, P.G., Ulcinas, A., Engledew, D.J., Hoshi, O., Ushiki, T., Miles, M.J.; "High-speed AFM of human chromosomes in liquid"; Nanotechnology, Vol. 19 (2008) p.384018 DOI: 10.1088/0957-4484/19/38/384018
Shinohara K., Kodera N., Ando T.; "Direct observation of single molecules in a π-conjugated polymer: High-Speed AFM imaging of two-molecular dynamic interaction in a chiral helical !-conjugated polymer"; Polymer Preprints 57 (2008) p.1679
Shinozaki Y., Siitonen A., Sumitomo K., Furukawa K., Torimitsu K.; "Effect of Ca²⁺ on Vesicle Fusion on Solid Surface: An In vitro Model of Protein-Accelerated Vesicle Fusion"; Japan. J. Appl. Phy s. 47 (2008) p.6164
Sugasawa H., Sugiyama Y., Morii T., Okada T.; "Dynamic Observation of 2686 bp DNA-BAL 31 Nuclease Interaction with Single Molecule Level Using High-Speed Atomic Force Microscopy"; Japan. J. Appl. Phys. 47 (2008) p.6168-6172
Tien S., Devasia S.; "AFM Imaging of Large Soft Samples in Liquid Medium Using Iterative Inverse Feedforward Control"; Proceedings of the 2008 American Control Conference (2008) p.3201-3206
Vicary, J., Miles, M.; "Pushing the boundaries of local oxidation nanolithography: Short timescales and high speeds"; Ultramicroscopy Vol. 108 Proceedings of the Ninth International Conference on Scanning Probe Micrososcopy, Sensors and Nanostructures (2008) p.1120-1123
Wu Y., Zou Q., Su C.; "A current cycle feedback iterative learning control approach to AFM imaging"; Proceedings of the 2008 American Control Conference 2008 (2008) p. 2040-2045
Yamamoto D., Uchihashi T., Kodera N., Ando T.; "Anisotropic diffusion of point defects in two-dimensional crystal of streptavidin observed by high-speed atomic force microscopy"; Nanotechnol. 19 (2008) p.384009

Papers 2007:

Ando T., Uchihashi T., Kodera N., Yamamoto D., Taniguchi M., Miyagi A., Yamashita H.; "Review: High-speed atomic force microscopy for observing dynamic biomolecular processes"; J. Mol. Recognit. 20 (2007) p.448-458
Crampton N., Yokokawa M., Dryden D.T.F., Edwardson J.M., Rao D.N., Takeyasu K., Yoshimura S.H., Henderson R.M.; "Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping"; PNAS 104 (2007) p.12755-12760
Ding L., Li Y., Chu H., Li C., Yang Z., Zhou W., Tang Z. K. ; "High speed atomic force microscope lithography driven by electrostatic interaction"; Appl. Phys. Lett. 91 (2007) p.023121
Kobayashi M., Sumitomo K., Torimitsu K.; "Real-time imaging of DNA-streptavidin complex formation in solution using a high-speed atomic force microscope"; Ultramicroscopy Volume 107 Issues 2-3 (2007) p.184-190
Li M., Tang H., Roukes M., "Ultra-sensitive NEMS-based cantilevers for sensing, scanned probe and very high-frequency applications"; Nature Nanotechnology 2 (2007) p.114-120
Morita S., Yamada H., Ando T.; "Japan AFM roadmap 2006"; Nanotechnol. 18 (2007) p.08401
Picco L.M., Bozec L., Ulcinas A., Engledew D.J., Antognozzi M., Horton M.A., Miles M.J.; "Breaking the speed limit with atomic force microscopy"; Nanotechnology 18/4 (2007) DOI: 10.1088/0957-4484/18/4/044030
Schitter G., Astrom K.J., DeMartini B.E., Thurner P.J., Turner K.L., Hansma P.K.; "Design and modeling of a high-speed AFM-scanner"; IEEE Transactions on Control Systems Technology 15/5 (2007)
Shinohara K., Kodera N., Ando T.; "Single molecular imaging of a micro-Brownian motion and a bond scission of a supramolecular chiral π-conjugated"; Chem. Lett. 36 (2007) p.1378-1379
Ulcinas A., Butler M., Heppenstall-Butler M., Singleton S., Miles M.; "Direct observation of spherulitic growth stages of CaCO₃ in a poly(acrylic acid)-chitosan system: In situ SPM study"; J. Cryst. Growth 307 (2007) p.378
Yamashita H., Uchihashi T., Kodera N., Miyagi A., Yamamoto D., Ando T.; "Tip-sample distance control using photo-thermal actuation of a small cantilever for high-speed atomic force microscopy"; Rev. Sci. Instrum. 78 (2007) p.083702

Papers 2006:

Ando T., Uchihashi T., Kodera N., Miyagi A., Nakakita R., Yamashita H., Sakashita M.; "High-speed atomic force microscopy for studying the dynamic behavior of protein molecules at work"; Jpn. J. Appl. Phys. 45 (2006) p.1897-1903
Fantner G., Schitter G., Kindt J., Ivanov T., Ivanova K., Patel R., Holten-Andersen N., Adams J., Thurner P., Rangelow I., Hansma P.; "Components for high speed atomic force microscopy"; Ultramicroscopy (2006)
Fukuma T., Kilpatrick J., Jarvis S.; "Phase modulation atomic force microscope with true atomic resolution"; Rev. Sci. Instrum. Vol. 77 (2006) p.123703
Hansma P.K., Schitter G., Fantner G.E., Prater C.; "High-speed atomic force microscopy"; Science 314 (2006) p.601-602
Hoogenboom B.W., Hug H.J., Pellmont Y., Martin S.; "Quantitative dynamic-mode scanning force microscopy in liquid"; Appl. Phys. Lett. 88 (2006) p.193109
Kageshima M., Togo S., Li Y. J., Naitoh Y., Sugawara Y.; "Wide-band and hysteresis-free regulation of piezoelectric actuator based on induced current for high-speed scanning probe microscopy"; Rev. Sci. Instrum. Vol. 77 (2006) p.103701
Kodera N., Sakashita M., Ando T.; "Dynamic proportional-integral-differential controller for high-speed atomic force microscopy"; Rev. Sci. Instrum. 77 (2006) p.083704
Koide H., Kinoshita T., Tanaka Y., Tanaka S., Nagura N., Meyer zu Hörste G., Miyagi A., Ando T.; "Identification of the Single Specific IQ Motif of Myosin V from Which Calmodulin Dissociates in the Presence of Ca2 +"; Biochemistry 45 (2006) p.11598-11604
Schäffer T.E.; "High-speed atomic force microscopy of biomolecules in motion"; in "Force Microscopy: Applications in Biology and Medicine", B. Jena, H. Hörber, eds., WILEY-VCH Verlag, Weinheim, ISBN 0-471-39628-1, (2006) p.221-247
Schitter G., Astrom K., DeMartini B., Fantner G., Turner K., Thurner P., Hansma P.; "Design and modeling of a high-speed scanner for atomic force microscopy"; 2006 American Control Conference ISSN 0743-1619 vol. 1-12 (2006) p. 502-507
Uchihashi T., Kodera N., Itoh H., Yamashita H., Ando T.; "Feed-forward control for high-speed AFM imaging of biomolecules"; Jpn. J. Appl. Phys. 45 (2006) p.1904-1908
Uchihashi T., Yamashita H., Ando T.; "Fast phase imaging in liquids using a rapid scan atomic force microscope"; Appl. Phys. Lett. 89 (2006) p.213112
Yokokawa M., Wada C., Ando T., Sakai N., Yagi A., Yoshimura S.H., Takeyasu K.; "Fast-scanning atomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL"; EMBO J. 25(2006) p.4567-4576
Yokokawa M., Yoshimura S.H., Naito Y., Ando T., Yagi A., Sakai N., Takeyasu K.; "Fast-scanning atomic force microscopy reveals the molecular mechanism of DNA cleavage by ApaI endonuclease"; IEE Proc Nanobiotechnol. 153 (2006) p.60-66

Papers 2005:

Ando T., Uchihashi T., Kodera N., Miyagi A., Nakakita R., Yamashita H., Matada K.; "High-speed AFM for studying the dynamic behavior of protein molecules at work"; e-J. Surf. Sci. Nanotechnol. 3 (2005) p.384-392
Anwar M., Rousso I.; "Atomic force microscopy with time resolution of microseconds"; Appl. Phys. Lett. 86 (2005) p.014101
Fantner G.E., Hegarty P., Kindt J.H., Schitter G., Cidade G.A.G., Hansma P.K.; "Data acquisition system for high speed atomic force microscopy"; Rev. Sci. Instrum. 76 (2005) p.026118
Fukuma T.,Kimura K., Kobayashi K., Matsushige K., Yamada H.; "Frequency-Modulation Atomic Force Microscopy at High Cantilever Resonance Frequencies using the Heterodyne Optical Beam Deflection Method"; Rev. Sci. Instrum. 76 (2005) p.126110
Hobbs J., Vasilev C., Humphris A.; "Real time observation of crystallization in polyethylene oxide with video rate atomic force microscopy"; Polymer 46 (2005) p.10226
Hoogenboom B.W., Frederix P.L.T.M., Hug H.J.; "Interferometer-based AFM for measuring with small cantilevers"; GIT Imaging & Microscopy 2 (2005) p.36-38
Hoogenboom B. W., Frederix P. L. T. M., Yang J. L., Martin S., Pellmont Y., Steinacher M., Zäch S., Langenbach E., Heimbeck H.-J., Engel A., Hug H. J.; "A Fabry-Perot interferometer for micrometer-sized cantilevers"; Appl. Phys. Lett. 86 (2005) p.074101
Humphris A.D.L., Miles M.J., Hobbs J.K.; "A mechanical microscope: High-speed atomic force microscopy"; Appl. Phys. Lett. 86 (2005) p.034106
Kodera N., Yamashita H., Ando T.; "Active damping of the scanner for high-speed atomic force microscopy"; Rev. Sci. Instrum. 76 (2005) p.053708
Rost M.J., Crama L., Schakel P., van Tol E., van Velzen-Williams G.B.E.M., Overgauw C.F., ter Horst H., Dekker H., Okhuijsen B., Seynen M., Vijftigschild A., Han P., Katan A.J., Schoots K., Schumm R., van Loo W., Oosterkamp T.H., Frenken J.W.M; "Scanning probe microscopes go video rate and beyond"; Rev. Sci. Instrum. 76 (2005) p.053710
Schäffer T.E., Fuchs H.; "Optimized detection of normal vibration modes of atomic force microscope cantilevers with the optical beam deflection method"; Journal of Applied Physics 97 (2005) 083524
Schitter G., Fantner G.E., Kindt J.H., Thurner P.J., Hansma P.K.; "On recent developments for high-speed atomic force microscopy"; Proceedings of the 2005 IEEE/ASME International Conference on Advanced Intelligent Mechatronics Monterey, California, USA, 24-28 July, 2005
Tien, S., Qingze Zou, Devasia, S. ; "Iterative control of dynamics-coupling-caused errors in piezoscanners during high-speed AFM operation"; Control Systems Technology, IEEE Transactions issue 6 (2005) p.921-931
Yang J. L., Despont M., Drechsler U., Hoogenboom B. W., Frederix P. L. T. M., Martin S., Engel A., Vettiger P., Hug H. J.; "Miniaturized single-crystal silicon cantilevers for scanning force microscopy"; Appl. Phys. Lett. 86 (2005) p.134101

Papers 2004:

Fukuma T., Kimura K., Kobayashi K., Yamada H., Matsushige K.; "Dynamic Force Microscopy at High Cantilever Resonance Frequencies using Heterodyne Optical Beam Deflection Method"; Appl. Phys. Lett 85 (2004) p.6287-6289
Gutsmann T., Fantner G., Kindt J., Venturoni M., Danielsen S., Hansma P.; "Force spectroscopy of collagen fibers to investigate their mechanical properties and structural organization"; Biophy. J. 86 (2004) p.3186
Kindt J.H., Fantner G.E., Cutroni J.A., Hansma P.K.; "Rigid design of fast scanning probe microscopes using finite element analysis"; Ultramicroscopy 100/3-4 (2004) p.259-265
Kindt J.H., Fantner G.E., Thompson J.B., Hansma P.K.; "Automated wafer-scale fabrication of electron beam deposited tips for atomic force microscopes using pattern recognition"; Nanotechnology 15 (2004) p.1131-1134
Kodera N., Kinoshita T., Ito T., Ando T.; "High-resolution imaging of myosin motor in action by a high-speed atomic force microscope"; Adv. Exp. Med. Biol. 538 (2003) p.119-127
Schitter G., Allgöwer F., Stemmer A.; "A new control strategy for high-speed atomic force microscopy "; Nanotechnology volume 15 issue 1 (2004) DOI 10.1088/0957-4484/15/1/021
Schitter G., Stark R.W., Stemmer A.; "Fast contact-mode atomic force microscopy on biological specimen by model-based control" Ultramicroscopy 100 (2004) p.253-257
Schitter G., Stemmer A.; "Identification and open-loop tracking control of a piezoelectric tube scanner for high-speed scanning-probe microscopy"; Control Systems Technology, IEEE Transactions issue 3 (2004) p.449-454 DOI: 10.1109/TCST.2004.824290
Tien S., Zou Q., Devasia, S. ; "Control of dynamics-coupling effects in piezo-actuator for high-speed AFM operation"; American Control Conference 2004 Proceedings of the 2004 volume 4 (2004) p.3116-3121
Zou Q., Leang K.K., Sadoun E., Reed M.J., Devasia S.; "Control issues in high-speed AFM for biological applications: collagen imaging example"; Asian J Control. (2004) p.164-178

Papers 2003:

Ando T., Kodera N., Naito Y., Kinoshita T., Furuta K., Toyoshima Y.; "A high-speed atomic force microscope for studying biological macromolecules in action"; Chem. Phys. Chem. 4 (2003) p.1196-1202
Humphris A., Hobbs J., Miles M.; "Ultra high-speed scanning near-field optical microscopy capable of over 100 frames per second"; Appl. Phys. Lett. 83 (2003) p.6
Kim Y., Nam H., Cho S., Hong J., Kim D., Bu J.; "PZT cantilever array integrated with piezoresistor sensor for high speed parallel operation of AFM"; Sensors and Actuators A: Physical Volume 103 Issues 1-2 (2003) p.122-129
Kitazawa M., Shiotani K., Toda A.; "Batch Fabrication of Sharpened Silicon Nitride Tips"; Jpn. J. Appl. Phys. 42 (2003) p.4844-4847
Kodera N., Kinoshita T., Ito T., Ando T.; "High-resolution imaging of myosin motor in action by a high-speed atomic force microscope"; Adv. Exp. Med. Biol. 538 (2003) p.119-127
Kodera N., Naito Y., Ito T., Ando T.; "Improvements on a high-speed atomic force Microscope"; Biophys. J. 84 (2003)
Miles M., Antognozzi M., Haschke H., Hobbs J., Humphris A., McMaster T.; "Tour de force microscopy"; materialstoday 6 2 (2003) p.30-37
Pedrak R., Ivanov T., Ivanova K., Gotszalk T., Abedinov N., Rangelow I. W., Edinger K., Tomerov E., Schenkel T., Hudek P.; "Micromachined atomic force microscopy sensor with integrated piezoresistive sensor and thermal bimorph actuator for high-speed tapping-mode atomic force microscopy phase-imaging in higher eigenmodes"; J. Vac. Sci. Technol. B 21/6 (2003) p.3102-3107
Rogers B., Sulchek T., Murray K., York D., Jones M., Manning L., Malekos S., Beneschott B., Adams J. D., Cavazos H., Minne S. C.; "High speed tapping mode atomic force microscopy in liquid using an insulated piezoelectric cantilever"; Rev. Sci. Instrum. 74 (2003) p.4683
Schitter G., Stemmer A.; "Model-based signal conditioning for high-speed atomic force and friction force microscopy"; Microelectronic Engineering Volumes 67-68(2003) p.938-944

Papers 2002:

Ando T., Kodera N., Maruyama D., Takai E., Saito K., Toda A.; "A High-speed atomic force microscope for studying biological macromolecules in action"; Jpn. J. Appl. Phys. 41 (2002) p.4851-4856
Kawakatsu H., Kawai S., Saya D., Nagashio M., Kobayashi D., Toshiyoshi H., Fujita H.; "Towards atomic force microscopy up to 100 MHz"; Review of Scientific Instruments 73 (2002) p.2317
Schäffer T.; "Force spectroscopy with a large dynamic range using small cantilevers and an array detector"; Journal of Applied Physics 91/7 (2002) p.4739-4746

Papers 2001:

Ando T., Kodera N., Takai E., Maruyama D., Saito K., Toda A.; "A high-speed atomic force microscope for studying biological macromolecules"; Proc. Natl. Acad. Sci. USA 98 (2001) p.12468-12472
Hobbs J., Humphris A., Miles M.; "In situ atomic force microscopy of polyethylene crystallization. 1. Crystallization from an oriented backbone"; Macromolecules 34 (2001) p.5508-5519
Nam H.-J., Cho S., Yee Y., Lee H.-M., Kim D.-C., Bu J.-U., Hong J.; "Fabrication and characteristics of piezoelectric PZT cantilever for high speed atomic force microscopy"; Integrated Ferroelectrics Volume 35 Issue 1 - 4 (2001) p.185-197

Schäffer T., Jiao Y.; "High speed force mapping using small cantilevers"; Biophysical Journal 80 (2001)

Papers 2000:

Chand A., Viani M., Schäffer T., Hansma P.; "Microfabricated small metal cantilevers with silicon tip for atomic force microscopy"; Journal of Microelectromechanical Systems 9 (2000) p.112-116
Hosaka S., Etoh K., Kikukawa A., Koyanagi H.; "Megahertz silicon atomic force microscopy (AFM) cantilever and high-speed readout in AFM-based recording"; J. Vac. Sci. Technol. B 18 (2000) p.94
Schäffer T., Richter M., Viani M.; "Array detector for the atomic force microscope"; Appl. Phys. Lett. 76 (2000) p.3644
Sulchek T., Hsieh R., Adams J., Minne S., Quate C., Adderton D.; "High-speed atomic force microscopy in liquid"; Rev. Sci. Instrum. 71 (2000) p.2097
Sulchek T., Hsieh R., Adams J., Yaralioglu G., Minne S., Quate C., Cleveland J., Atalar A., Adderton D.; "High-speed tapping mode imaging with active Q control for atomic force microscopy"; Appl. Phys. Lett. 76 (2000) p.1473
Viani M., Pietrasanta L., Thompson J., Chand A., Gebeshuber I., Kindt J., Richter M., Hansma H., Hansma P.; "Probing protein-protein interactions in real time"; Nature Structural Biology Vol. 7 (8) (2000) p.644-647

Papers 1999:

Sulchek T., Minne S., Adams J., Fletcher D., Atalar A., Quate C., Adderton D.; "Dual integrated actuators for extended range high speed atomic force microscopy"; Appl. Phys. Lett. 75 (1999) p.1637
Viani M., Schäffer T., Chand A., Rief M., Gaub H., Hansma P.; "Small cantilevers for force spectroscopy of single molecules"; Journal of Applied Physics 86/4 (1999) p.2258-2262
Viani M., Schäffer T., Paloczi G., Pietrasanta L., Smith B., Thompson J., Richter M., Rief M., Gaub H., Plaxco K., Cleveland A., Hansma H., Hansma P.; "Fast imaging and fast force spectroscopy of single biopolymers with a new atomic force microscope designed for small cantilevers"; Rev. Sci. Instrum. 70 (1999) p.4300

Papers 1998:

Hosaka S., Etoh K., Kikukawa A., Koyanagi H., Itoh K.; "6.6 MHz silicon AFM cantilever for high-speed readout in AFM-based recording"; Microelectronic engineering (1998) p.109-112
Minne S., Yaralioglu G., Manalis S., Adams J., Zesch J., Atalar A., Quate C.; "Automated parallel high-speed atomic force microscopy"; Appl. Phys. Lett. 72 (1998) p.2340
Paloczi G., Smith B., Hansma P., Walters D., Wendman M.; "Rapid imaging of calcite crystal growth using atomic force microscopy with small cantilevers"; Appl. Phys. Lett. 73 (1998) p.1658
Schäffer T., Hansma P.; "Characterization and optimization of the detection sensitivity of an atomic force microscope for small cantilevers"; J. Appl. Phys. 84 (1998) p.4661

Papers 1997:

Schäffer T., Viani M., Walters D., Drake B., Runge E., Cleveland J., Wendman M., Hansma P.; "Atomic force microscope for small cantilevers"; Proc. SPIE 3009 (1997) p.48-52
Walters D., Viani M., Paloczi G., Schäffer T., Cleveland J., Wendman M., Gurley G., Elings V., Hansma P.; "Atomic force microscopy using small cantilevers"; Proc. SPIE 3009/43 (1997)

Papers 1996:

Manalis S., Minne S., Quate C.; "Atomic force microscopy for high speed imaging using cantilevers with an integrated actuator and sensor"; Appl. Phys. Lett. 68 (1996) p.871
Manalis S. R., Minne S. C., Atalar A., Quate C. F.; "High‐speed atomic force microscopy using an integrated actuator and optical lever detection"; Review of Scientific Instruments Volume 67 Issue 9 (1996) p.3294-3297
Schäffer T., Cleveland J., Ohnesorge F., Walters D., Hansma P.; "Studies of vibrating atomic force microscope cantilevers in liquid"; J. Appl. Phys. 80/7 (1996) p.3622-3627
Walters D., Cleveland J., Thomson N., Hansma P., Wendman M., Gurley G., Elings V.; "Short cantilevers for atomic force microscopy"; Rev. Sci. Instrum. 67 (1996) p.3583-3590

Previous papers:

Hillner P.E., Gratz A.J., Manne S., Hansma P.K.; "Atomic-scale imaging of calcite growth and dissolution in real time"; Geology (1992) p.359-362
Barrett R., Quate C.; "High-speed, large-scale imaging with the atomic force microscope"; Journal of Vacuum Science & Technology B: Microelectronics and Nanometer Structures Volume 9 Issue 2 (1991) p.302-306

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